miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1646 3' -65.5 NC_001347.2 + 128462 1.07 0.001032
Target:  5'- gCGGCGCGACGGCGCGCGCACGCGGGAu -3'
miRNA:   3'- -GCCGCGCUGCCGCGCGCGUGCGCCCU- -5'
1646 3' -65.5 NC_001347.2 + 148603 0.78 0.116417
Target:  5'- gCGGCGUGAcCGGCgGUGCGguCGCGGGu -3'
miRNA:   3'- -GCCGCGCU-GCCG-CGCGCguGCGCCCu -5'
1646 3' -65.5 NC_001347.2 + 73556 0.78 0.124961
Target:  5'- uCGGUcccgGCGACGGauggGCGCGCACGCGGa- -3'
miRNA:   3'- -GCCG----CGCUGCCg---CGCGCGUGCGCCcu -5'
1646 3' -65.5 NC_001347.2 + 82393 0.77 0.147201
Target:  5'- cCGGCGUGAaGGUGCGCGCcaacACGCGGa- -3'
miRNA:   3'- -GCCGCGCUgCCGCGCGCG----UGCGCCcu -5'
1646 3' -65.5 NC_001347.2 + 1346 0.75 0.193813
Target:  5'- gGGCGCGACGGaccuGCGUcaacugucGC-CGCGGGAc -3'
miRNA:   3'- gCCGCGCUGCCg---CGCG--------CGuGCGCCCU- -5'
1646 3' -65.5 NC_001347.2 + 140566 0.74 0.236826
Target:  5'- aCGGgGUuccgGGCGGCG-GUGCugGCGGGGg -3'
miRNA:   3'- -GCCgCG----CUGCCGCgCGCGugCGCCCU- -5'
1646 3' -65.5 NC_001347.2 + 48851 0.74 0.24207
Target:  5'- gCGGUGCGGCGuuCGCGUGCACGCGc-- -3'
miRNA:   3'- -GCCGCGCUGCc-GCGCGCGUGCGCccu -5'
1646 3' -65.5 NC_001347.2 + 197259 0.73 0.252849
Target:  5'- aGcCGCGGCGGCGCGUuauaaGCAcCGUGGGGu -3'
miRNA:   3'- gCcGCGCUGCCGCGCG-----CGU-GCGCCCU- -5'
1646 3' -65.5 NC_001347.2 + 159480 0.73 0.252849
Target:  5'- uCGGCGCGGCGGCuGCugaacuCGCGCGaUGGGu -3'
miRNA:   3'- -GCCGCGCUGCCG-CGc-----GCGUGC-GCCCu -5'
1646 3' -65.5 NC_001347.2 + 194015 0.73 0.255052
Target:  5'- uGGUGCGGCuGGCGCGCgaccucaggggcuucGUGCGCGuGGGg -3'
miRNA:   3'- gCCGCGCUG-CCGCGCG---------------CGUGCGC-CCU- -5'
1646 3' -65.5 NC_001347.2 + 229537 0.73 0.258385
Target:  5'- gCGGCGgGugGGUGUGUGCcggguguguCGCGGGc -3'
miRNA:   3'- -GCCGCgCugCCGCGCGCGu--------GCGCCCu -5'
1646 3' -65.5 NC_001347.2 + 37922 0.73 0.258385
Target:  5'- uCGGCGCccACaGCGCG-GCGCGCGGGu -3'
miRNA:   3'- -GCCGCGc-UGcCGCGCgCGUGCGCCCu -5'
1646 3' -65.5 NC_001347.2 + 2031 0.73 0.275587
Target:  5'- cCGGCgGgGACGcGcCGUGCGCGauaGCGGGAg -3'
miRNA:   3'- -GCCG-CgCUGC-C-GCGCGCGUg--CGCCCU- -5'
1646 3' -65.5 NC_001347.2 + 2116 0.73 0.277949
Target:  5'- gGGCGCGauuugcgugccuaacGCGGa-CGCGCACGCGGuGGu -3'
miRNA:   3'- gCCGCGC---------------UGCCgcGCGCGUGCGCC-CU- -5'
1646 3' -65.5 NC_001347.2 + 137464 0.72 0.287556
Target:  5'- -cGCGCG-CGuGCGUGCGCGCGCGuGAc -3'
miRNA:   3'- gcCGCGCuGC-CGCGCGCGUGCGCcCU- -5'
1646 3' -65.5 NC_001347.2 + 109478 0.72 0.293692
Target:  5'- gCGGCGCcAUGGCGgGCGCcuccacuucCGCGGGc -3'
miRNA:   3'- -GCCGCGcUGCCGCgCGCGu--------GCGCCCu -5'
1646 3' -65.5 NC_001347.2 + 78433 0.72 0.29993
Target:  5'- cCGGCcCGGCGGCGCcCGa--GCGGGAc -3'
miRNA:   3'- -GCCGcGCUGCCGCGcGCgugCGCCCU- -5'
1646 3' -65.5 NC_001347.2 + 38748 0.72 0.306271
Target:  5'- uCGGaGCGcCGGCugaggcagcaGCGuCGCGCGCGGGGu -3'
miRNA:   3'- -GCCgCGCuGCCG----------CGC-GCGUGCGCCCU- -5'
1646 3' -65.5 NC_001347.2 + 2356 0.71 0.339503
Target:  5'- gGGCGUGcUGG-GCGCGCugGCgcuGGGAc -3'
miRNA:   3'- gCCGCGCuGCCgCGCGCGugCG---CCCU- -5'
1646 3' -65.5 NC_001347.2 + 140685 0.71 0.346456
Target:  5'- gGGCGCGGCGGUcgcauguuggGCGCuaGCGUGGc- -3'
miRNA:   3'- gCCGCGCUGCCG----------CGCGcgUGCGCCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.