miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1646 3' -65.5 NC_001347.2 + 15066 0.67 0.586527
Target:  5'- aGGCGUGACGGgaCGUcCGCgAC-CGGGAc -3'
miRNA:   3'- gCCGCGCUGCC--GCGcGCG-UGcGCCCU- -5'
1646 3' -65.5 NC_001347.2 + 108795 0.67 0.586527
Target:  5'- gCGGCaCGugGuGUGCGCGCACGagcuGGu- -3'
miRNA:   3'- -GCCGcGCugC-CGCGCGCGUGCg---CCcu -5'
1646 3' -65.5 NC_001347.2 + 191260 0.67 0.586527
Target:  5'- aCGGCGUaaugcgGGCaGGCGUGCGgCACGaaGGGc -3'
miRNA:   3'- -GCCGCG------CUG-CCGCGCGC-GUGCgcCCU- -5'
1646 3' -65.5 NC_001347.2 + 227993 0.67 0.586527
Target:  5'- uGGCGUGugGaGUGCucgggauggGUGgACGUGGGGa -3'
miRNA:   3'- gCCGCGCugC-CGCG---------CGCgUGCGCCCU- -5'
1646 3' -65.5 NC_001347.2 + 1744 0.67 0.577341
Target:  5'- cCGGCaCGACGGUG-GCGCugcagACGcCGGGc -3'
miRNA:   3'- -GCCGcGCUGCCGCgCGCG-----UGC-GCCCu -5'
1646 3' -65.5 NC_001347.2 + 175069 0.67 0.577341
Target:  5'- uCGGCGUGcaucccgagacGCGGCagGCGCacuuucugGCGCGCGGa- -3'
miRNA:   3'- -GCCGCGC-----------UGCCG--CGCG--------CGUGCGCCcu -5'
1646 3' -65.5 NC_001347.2 + 139442 0.67 0.577341
Target:  5'- aGGCGaCcACGGUGCGacuGCACgGCGGcGAg -3'
miRNA:   3'- gCCGC-GcUGCCGCGCg--CGUG-CGCC-CU- -5'
1646 3' -65.5 NC_001347.2 + 126896 0.67 0.576425
Target:  5'- aCGGCGgccgcauCGACGGCaCGCacCugGCGGGc -3'
miRNA:   3'- -GCCGC-------GCUGCCGcGCGc-GugCGCCCu -5'
1646 3' -65.5 NC_001347.2 + 85508 0.67 0.576425
Target:  5'- uCGG-GCGGCuugagcgGGCGCGCGCGCuugaGCGuGGc -3'
miRNA:   3'- -GCCgCGCUG-------CCGCGCGCGUG----CGC-CCu -5'
1646 3' -65.5 NC_001347.2 + 44032 0.67 0.568188
Target:  5'- gCGGUgGCGACGGCaGCG-GUggugGCGCuGGGGg -3'
miRNA:   3'- -GCCG-CGCUGCCG-CGCgCG----UGCG-CCCU- -5'
1646 3' -65.5 NC_001347.2 + 155286 0.67 0.559072
Target:  5'- aGGUaGCGGCGGCGaCGgaGCugGUGGa- -3'
miRNA:   3'- gCCG-CGCUGCCGC-GCg-CGugCGCCcu -5'
1646 3' -65.5 NC_001347.2 + 37340 0.67 0.559072
Target:  5'- gGGCGCGACGGCaauuCGuCGUAgGUaGGAu -3'
miRNA:   3'- gCCGCGCUGCCGc---GC-GCGUgCGcCCU- -5'
1646 3' -65.5 NC_001347.2 + 95436 0.67 0.553622
Target:  5'- uGGCGggucgcgacgaCGACacuuucguuuuuaugGGCGCGCGuCACGCGGc- -3'
miRNA:   3'- gCCGC-----------GCUG---------------CCGCGCGC-GUGCGCCcu -5'
1646 3' -65.5 NC_001347.2 + 1915 0.67 0.549997
Target:  5'- uGGCGCugggcGCGGUGCuGCcCGCGCGGuGGc -3'
miRNA:   3'- gCCGCGc----UGCCGCG-CGcGUGCGCC-CU- -5'
1646 3' -65.5 NC_001347.2 + 156521 0.67 0.549997
Target:  5'- uGGCGCGcccgcauguCGGC-CGCGCuuacgcgaACGgCGGGAa -3'
miRNA:   3'- gCCGCGCu--------GCCGcGCGCG--------UGC-GCCCU- -5'
1646 3' -65.5 NC_001347.2 + 2491 0.67 0.549997
Target:  5'- -cGCGCuGugGGCGCGCGagcCGCaCGGGc -3'
miRNA:   3'- gcCGCG-CugCCGCGCGC---GUGcGCCCu -5'
1646 3' -65.5 NC_001347.2 + 201493 0.67 0.549997
Target:  5'- cCGGCGuCGcUGGCGCuugGUGCGCGacgaaggaCGGGAu -3'
miRNA:   3'- -GCCGC-GCuGCCGCG---CGCGUGC--------GCCCU- -5'
1646 3' -65.5 NC_001347.2 + 39961 0.67 0.549997
Target:  5'- aCGGCgaauaaaaGCGACGuGCgGCGCGCACgGCGa-- -3'
miRNA:   3'- -GCCG--------CGCUGC-CG-CGCGCGUG-CGCccu -5'
1646 3' -65.5 NC_001347.2 + 78361 0.67 0.540968
Target:  5'- cCGGCGUggugggacccGGCGGCGC-CGUG-GUGGGAg -3'
miRNA:   3'- -GCCGCG----------CUGCCGCGcGCGUgCGCCCU- -5'
1646 3' -65.5 NC_001347.2 + 157812 0.67 0.531989
Target:  5'- aCGGCaGCcGCGGuCGC-CGCAguUGCGGGGc -3'
miRNA:   3'- -GCCG-CGcUGCC-GCGcGCGU--GCGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.