miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1646 3' -65.5 NC_001347.2 + 53 0.69 0.42946
Target:  5'- gGGCGCGGCcgggugGGUGUGUGCcggguguguCGCGGGc -3'
miRNA:   3'- gCCGCGCUG------CCGCGCGCGu--------GCGCCCu -5'
1646 3' -65.5 NC_001347.2 + 181 0.7 0.382728
Target:  5'- gGGCGUG-UGGCGgGUGUGCcgGCGGGGu -3'
miRNA:   3'- gCCGCGCuGCCGCgCGCGUG--CGCCCU- -5'
1646 3' -65.5 NC_001347.2 + 218 0.69 0.421439
Target:  5'- gGGUGUGuCGGCgGUGUGCGCGgccuCGGGGu -3'
miRNA:   3'- gCCGCGCuGCCG-CGCGCGUGC----GCCCU- -5'
1646 3' -65.5 NC_001347.2 + 591 0.69 0.444945
Target:  5'- gGGCGUccaccuaGAUGG-GUGCGCGCcCGGGAg -3'
miRNA:   3'- gCCGCG-------CUGCCgCGCGCGUGcGCCCU- -5'
1646 3' -65.5 NC_001347.2 + 710 0.68 0.523064
Target:  5'- uGGCGCcaaGGCGGCGC-CaGCACGCGc-- -3'
miRNA:   3'- gCCGCG---CUGCCGCGcG-CGUGCGCccu -5'
1646 3' -65.5 NC_001347.2 + 1346 0.75 0.193813
Target:  5'- gGGCGCGACGGaccuGCGUcaacugucGC-CGCGGGAc -3'
miRNA:   3'- gCCGCGCUGCCg---CGCG--------CGuGCGCCCU- -5'
1646 3' -65.5 NC_001347.2 + 1744 0.67 0.577341
Target:  5'- cCGGCaCGACGGUG-GCGCugcagACGcCGGGc -3'
miRNA:   3'- -GCCGcGCUGCCGCgCGCG-----UGC-GCCCu -5'
1646 3' -65.5 NC_001347.2 + 1915 0.67 0.549997
Target:  5'- uGGCGCugggcGCGGUGCuGCcCGCGCGGuGGc -3'
miRNA:   3'- gCCGCGc----UGCCGCG-CGcGUGCGCC-CU- -5'
1646 3' -65.5 NC_001347.2 + 1956 0.67 0.586527
Target:  5'- gCGGCGgGGCcGGCGaCGgGgACggcgGCGGGGa -3'
miRNA:   3'- -GCCGCgCUG-CCGC-GCgCgUG----CGCCCU- -5'
1646 3' -65.5 NC_001347.2 + 2031 0.73 0.275587
Target:  5'- cCGGCgGgGACGcGcCGUGCGCGauaGCGGGAg -3'
miRNA:   3'- -GCCG-CgCUGC-C-GCGCGCGUg--CGCCCU- -5'
1646 3' -65.5 NC_001347.2 + 2116 0.73 0.277949
Target:  5'- gGGCGCGauuugcgugccuaacGCGGa-CGCGCACGCGGuGGu -3'
miRNA:   3'- gCCGCGC---------------UGCCgcGCGCGUGCGCC-CU- -5'
1646 3' -65.5 NC_001347.2 + 2356 0.71 0.339503
Target:  5'- gGGCGUGcUGG-GCGCGCugGCgcuGGGAc -3'
miRNA:   3'- gCCGCGCuGCCgCGCGCGugCG---CCCU- -5'
1646 3' -65.5 NC_001347.2 + 2491 0.67 0.549997
Target:  5'- -cGCGCuGugGGCGCGCGagcCGCaCGGGc -3'
miRNA:   3'- gcCGCG-CugCCGCGCGC---GUGcGCCCu -5'
1646 3' -65.5 NC_001347.2 + 13950 0.68 0.523064
Target:  5'- gGGCGCGG-GGUG-GCGaa-GCGGGAg -3'
miRNA:   3'- gCCGCGCUgCCGCgCGCgugCGCCCU- -5'
1646 3' -65.5 NC_001347.2 + 15066 0.67 0.586527
Target:  5'- aGGCGUGACGGgaCGUcCGCgAC-CGGGAc -3'
miRNA:   3'- gCCGCGCUGCC--GCGcGCG-UGcGCCCU- -5'
1646 3' -65.5 NC_001347.2 + 15635 0.66 0.623486
Target:  5'- -cGCGCGAgGGCGCG-Ga--GCGGGu -3'
miRNA:   3'- gcCGCGCUgCCGCGCgCgugCGCCCu -5'
1646 3' -65.5 NC_001347.2 + 37340 0.67 0.559072
Target:  5'- gGGCGCGACGGCaauuCGuCGUAgGUaGGAu -3'
miRNA:   3'- gCCGCGCUGCCGc---GC-GCGUgCGcCCU- -5'
1646 3' -65.5 NC_001347.2 + 37922 0.73 0.258385
Target:  5'- uCGGCGCccACaGCGCG-GCGCGCGGGu -3'
miRNA:   3'- -GCCGCGc-UGcCGCGCgCGUGCGCCCu -5'
1646 3' -65.5 NC_001347.2 + 38748 0.72 0.306271
Target:  5'- uCGGaGCGcCGGCugaggcagcaGCGuCGCGCGCGGGGu -3'
miRNA:   3'- -GCCgCGCuGCCG----------CGC-GCGUGCGCCCU- -5'
1646 3' -65.5 NC_001347.2 + 39677 0.7 0.36792
Target:  5'- aGGCaGCGAcgugcaCGGCGCGUGCugGCGc-- -3'
miRNA:   3'- gCCG-CGCU------GCCGCGCGCGugCGCccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.