miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1646 5' -53.5 NC_001347.2 + 200577 0.66 0.989423
Target:  5'- cGUCU--ACUAcCugGC-CCGCAACUCa -3'
miRNA:   3'- -CAGAguUGAU-GugCGuGGCGUUGGGc -5'
1646 5' -53.5 NC_001347.2 + 39160 0.66 0.989423
Target:  5'- cGUCgc-GCUGCgaccacuuGCGCAUggCGCGGCCCGu -3'
miRNA:   3'- -CAGaguUGAUG--------UGCGUG--GCGUUGGGC- -5'
1646 5' -53.5 NC_001347.2 + 156002 0.66 0.989423
Target:  5'- gGUCcCAgcgaGCUGCGCGuCACCG-AugCCGg -3'
miRNA:   3'- -CAGaGU----UGAUGUGC-GUGGCgUugGGC- -5'
1646 5' -53.5 NC_001347.2 + 5518 0.66 0.988031
Target:  5'- --gUCGACUGCAaa-ACCGCcAGCCCu -3'
miRNA:   3'- cagAGUUGAUGUgcgUGGCG-UUGGGc -5'
1646 5' -53.5 NC_001347.2 + 38044 0.66 0.986501
Target:  5'- cGUCcCAGCgccaGCGCGCCcaGCAcGCCCGc -3'
miRNA:   3'- -CAGaGUUGaug-UGCGUGG--CGU-UGGGC- -5'
1646 5' -53.5 NC_001347.2 + 114900 0.66 0.984826
Target:  5'- uGUCUCAGCccagaggccgUACugGCcgcCCGC-GCCCu -3'
miRNA:   3'- -CAGAGUUG----------AUGugCGu--GGCGuUGGGc -5'
1646 5' -53.5 NC_001347.2 + 158792 0.66 0.982996
Target:  5'- uGUCU-AAC-AC-CGCGCCGgGACCCa -3'
miRNA:   3'- -CAGAgUUGaUGuGCGUGGCgUUGGGc -5'
1646 5' -53.5 NC_001347.2 + 109777 0.66 0.982996
Target:  5'- aUCUCGccgaauuggaagGCguaugGCAgccCGCugCGCAACCCa -3'
miRNA:   3'- cAGAGU------------UGa----UGU---GCGugGCGUUGGGc -5'
1646 5' -53.5 NC_001347.2 + 162627 0.66 0.982996
Target:  5'- -gCUCAGCUGCugcaGCGCCGaCAGCaaGu -3'
miRNA:   3'- caGAGUUGAUGug--CGUGGC-GUUGggC- -5'
1646 5' -53.5 NC_001347.2 + 129828 0.66 0.982996
Target:  5'- -gCUCAGCUACAUGaaguaccacCACCuGCAcgggcuACCCGu -3'
miRNA:   3'- caGAGUUGAUGUGC---------GUGG-CGU------UGGGC- -5'
1646 5' -53.5 NC_001347.2 + 228188 0.66 0.982804
Target:  5'- uGUCUCGGCcggcauccACGCGCcacguucACCGCGuuguGCCCa -3'
miRNA:   3'- -CAGAGUUGa-------UGUGCG-------UGGCGU----UGGGc -5'
1646 5' -53.5 NC_001347.2 + 114312 0.67 0.981821
Target:  5'- uGUCUCgGACcACGcCGUgcuuagucgcaagacGCCGCAACCCu -3'
miRNA:   3'- -CAGAG-UUGaUGU-GCG---------------UGGCGUUGGGc -5'
1646 5' -53.5 NC_001347.2 + 157100 0.67 0.981005
Target:  5'- cGUCUCcg--ACACGCuCCGCAcACCgCGa -3'
miRNA:   3'- -CAGAGuugaUGUGCGuGGCGU-UGG-GC- -5'
1646 5' -53.5 NC_001347.2 + 78410 0.67 0.981005
Target:  5'- cGUCg-GGCUGCuGC-CGCCGCcACCCGg -3'
miRNA:   3'- -CAGagUUGAUG-UGcGUGGCGuUGGGC- -5'
1646 5' -53.5 NC_001347.2 + 174454 0.67 0.980375
Target:  5'- cGUCUCAGCUGgccaaACGguugguucuucaccUACUGCGACCUGu -3'
miRNA:   3'- -CAGAGUUGAUg----UGC--------------GUGGCGUUGGGC- -5'
1646 5' -53.5 NC_001347.2 + 4132 0.67 0.978844
Target:  5'- uUCgUCAAUaaaacACACGcCGCCGUGACCCa -3'
miRNA:   3'- cAG-AGUUGa----UGUGC-GUGGCGUUGGGc -5'
1646 5' -53.5 NC_001347.2 + 40328 0.67 0.976507
Target:  5'- ---cCAAC-ACACGC-CCGCGacacACCCGg -3'
miRNA:   3'- cagaGUUGaUGUGCGuGGCGU----UGGGC- -5'
1646 5' -53.5 NC_001347.2 + 145353 0.67 0.976507
Target:  5'- cUCUCGAucgcgugcCUGCGCGacgaACUGC-ACCCGg -3'
miRNA:   3'- cAGAGUU--------GAUGUGCg---UGGCGuUGGGC- -5'
1646 5' -53.5 NC_001347.2 + 86634 0.67 0.976507
Target:  5'- -cCUCAGCaaccguCACGUuCCGCGuCCCGg -3'
miRNA:   3'- caGAGUUGau----GUGCGuGGCGUuGGGC- -5'
1646 5' -53.5 NC_001347.2 + 24249 0.67 0.973985
Target:  5'- cUgUCAuggguCUGCGCuuuccCACCGCGACCCa -3'
miRNA:   3'- cAgAGUu----GAUGUGc----GUGGCGUUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.