miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1646 5' -53.5 NC_001347.2 + 128496 1.08 0.008939
Target:  5'- uGUCUCAACUACACGCACCGCAACCCGc -3'
miRNA:   3'- -CAGAGUUGAUGUGCGUGGCGUUGGGC- -5'
1646 5' -53.5 NC_001347.2 + 160637 0.77 0.591401
Target:  5'- -aCUCAggcGCaGCACgGUACCGCGGCCCGg -3'
miRNA:   3'- caGAGU---UGaUGUG-CGUGGCGUUGGGC- -5'
1646 5' -53.5 NC_001347.2 + 169078 0.77 0.591401
Target:  5'- cGUCUCGGCcaGCACGCGCUGCcuGCUCGa -3'
miRNA:   3'- -CAGAGUUGa-UGUGCGUGGCGu-UGGGC- -5'
1646 5' -53.5 NC_001347.2 + 169122 0.76 0.630856
Target:  5'- -cCUCGGCcGCGCGCGCCGCGcugcaguggcuggACCUGg -3'
miRNA:   3'- caGAGUUGaUGUGCGUGGCGU-------------UGGGC- -5'
1646 5' -53.5 NC_001347.2 + 86354 0.75 0.702377
Target:  5'- -cCUCGGCUACugGCGUACCGUgGGCCCGc -3'
miRNA:   3'- caGAGUUGAUG--UGCGUGGCG-UUGGGC- -5'
1646 5' -53.5 NC_001347.2 + 191214 0.74 0.722129
Target:  5'- -gCUCGGa-GCAC-CGCCGCAGCCCGg -3'
miRNA:   3'- caGAGUUgaUGUGcGUGGCGUUGGGC- -5'
1646 5' -53.5 NC_001347.2 + 64741 0.74 0.751164
Target:  5'- cUCUCAucgugccgcagACUugAUGUGCCGCcGCCCGg -3'
miRNA:   3'- cAGAGU-----------UGAugUGCGUGGCGuUGGGC- -5'
1646 5' -53.5 NC_001347.2 + 127509 0.72 0.823429
Target:  5'- -cCUCuuugGCUACACGCACCcCGACCgGc -3'
miRNA:   3'- caGAGu---UGAUGUGCGUGGcGUUGGgC- -5'
1646 5' -53.5 NC_001347.2 + 193597 0.71 0.855734
Target:  5'- aUC-CAuCUGCGCGCGuuGCAACCUa -3'
miRNA:   3'- cAGaGUuGAUGUGCGUggCGUUGGGc -5'
1646 5' -53.5 NC_001347.2 + 21786 0.71 0.870723
Target:  5'- -cUUUGGCUGCuGCGgGCCGCGGCCCc -3'
miRNA:   3'- caGAGUUGAUG-UGCgUGGCGUUGGGc -5'
1646 5' -53.5 NC_001347.2 + 165461 0.71 0.877196
Target:  5'- -gUUUGGCgUGCGCGUACCGCAgaaagucgaagauGCCCGg -3'
miRNA:   3'- caGAGUUG-AUGUGCGUGGCGU-------------UGGGC- -5'
1646 5' -53.5 NC_001347.2 + 196942 0.71 0.877905
Target:  5'- uUUUCAagcugcgccgggGCUGuCGCGCGCCGCcgacGCCCGa -3'
miRNA:   3'- cAGAGU------------UGAU-GUGCGUGGCGu---UGGGC- -5'
1646 5' -53.5 NC_001347.2 + 28611 0.71 0.877905
Target:  5'- -gCUCAccgucaaauuGCUACACGgACgGCGACCUGc -3'
miRNA:   3'- caGAGU----------UGAUGUGCgUGgCGUUGGGC- -5'
1646 5' -53.5 NC_001347.2 + 208814 0.7 0.910509
Target:  5'- -gCUCAgccGCUGCGcCGCGCCGCcgUCCu -3'
miRNA:   3'- caGAGU---UGAUGU-GCGUGGCGuuGGGc -5'
1646 5' -53.5 NC_001347.2 + 89681 0.7 0.916345
Target:  5'- cGUCUCGACcGCACaaGCGCCG--GCCCc -3'
miRNA:   3'- -CAGAGUUGaUGUG--CGUGGCguUGGGc -5'
1646 5' -53.5 NC_001347.2 + 62582 0.7 0.921948
Target:  5'- cGUCUaCGGCUccACACGCAuCUGCAAgucccuggcCCCGg -3'
miRNA:   3'- -CAGA-GUUGA--UGUGCGU-GGCGUU---------GGGC- -5'
1646 5' -53.5 NC_001347.2 + 156112 0.7 0.921948
Target:  5'- -aCUCAGCUACugGgagaGCCGCAcagACCaCGu -3'
miRNA:   3'- caGAGUUGAUGugCg---UGGCGU---UGG-GC- -5'
1646 5' -53.5 NC_001347.2 + 162223 0.69 0.932449
Target:  5'- uUCUCGGgUACACGCgugacggaGCUGCu-CCCGg -3'
miRNA:   3'- cAGAGUUgAUGUGCG--------UGGCGuuGGGC- -5'
1646 5' -53.5 NC_001347.2 + 158088 0.69 0.942015
Target:  5'- -aCUCAGCgcCGCGCugCGCGgcgGCCUc -3'
miRNA:   3'- caGAGUUGauGUGCGugGCGU---UGGGc -5'
1646 5' -53.5 NC_001347.2 + 110447 0.68 0.949417
Target:  5'- gGUCUCGguacuggccuuugcGCUGC-CGCuggACCGCGuGCCCGu -3'
miRNA:   3'- -CAGAGU--------------UGAUGuGCG---UGGCGU-UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.