miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1646 5' -53.5 NC_001347.2 + 4132 0.67 0.978844
Target:  5'- uUCgUCAAUaaaacACACGcCGCCGUGACCCa -3'
miRNA:   3'- cAG-AGUUGa----UGUGC-GUGGCGUUGGGc -5'
1646 5' -53.5 NC_001347.2 + 5518 0.66 0.988031
Target:  5'- --gUCGACUGCAaa-ACCGCcAGCCCu -3'
miRNA:   3'- cagAGUUGAUGUgcgUGGCG-UUGGGc -5'
1646 5' -53.5 NC_001347.2 + 16493 0.68 0.950655
Target:  5'- aGUUUCGGCUGCuugACGgACUGCuGGCCCu -3'
miRNA:   3'- -CAGAGUUGAUG---UGCgUGGCG-UUGGGc -5'
1646 5' -53.5 NC_001347.2 + 21786 0.71 0.870723
Target:  5'- -cUUUGGCUGCuGCGgGCCGCGGCCCc -3'
miRNA:   3'- caGAGUUGAUG-UGCgUGGCGUUGGGc -5'
1646 5' -53.5 NC_001347.2 + 24249 0.67 0.973985
Target:  5'- cUgUCAuggguCUGCGCuuuccCACCGCGACCCa -3'
miRNA:   3'- cAgAGUu----GAUGUGc----GUGGCGUUGGGc -5'
1646 5' -53.5 NC_001347.2 + 25675 0.67 0.973722
Target:  5'- uUCUCAGCUGCACcggcguaGCGuuGUuggcuCCCGa -3'
miRNA:   3'- cAGAGUUGAUGUG-------CGUggCGuu---GGGC- -5'
1646 5' -53.5 NC_001347.2 + 28611 0.71 0.877905
Target:  5'- -gCUCAccgucaaauuGCUACACGgACgGCGACCUGc -3'
miRNA:   3'- caGAGU----------UGAUGUGCgUGgCGUUGGGC- -5'
1646 5' -53.5 NC_001347.2 + 38044 0.66 0.986501
Target:  5'- cGUCcCAGCgccaGCGCGCCcaGCAcGCCCGc -3'
miRNA:   3'- -CAGaGUUGaug-UGCGUGG--CGU-UGGGC- -5'
1646 5' -53.5 NC_001347.2 + 39160 0.66 0.989423
Target:  5'- cGUCgc-GCUGCgaccacuuGCGCAUggCGCGGCCCGu -3'
miRNA:   3'- -CAGaguUGAUG--------UGCGUG--GCGUUGGGC- -5'
1646 5' -53.5 NC_001347.2 + 40328 0.67 0.976507
Target:  5'- ---cCAAC-ACACGC-CCGCGacacACCCGg -3'
miRNA:   3'- cagaGUUGaUGUGCGuGGCGU----UGGGC- -5'
1646 5' -53.5 NC_001347.2 + 50823 0.68 0.968363
Target:  5'- -gCUCuACUGCAacUGCACCaGCAACCa- -3'
miRNA:   3'- caGAGuUGAUGU--GCGUGG-CGUUGGgc -5'
1646 5' -53.5 NC_001347.2 + 62582 0.7 0.921948
Target:  5'- cGUCUaCGGCUccACACGCAuCUGCAAgucccuggcCCCGg -3'
miRNA:   3'- -CAGA-GUUGA--UGUGCGU-GGCGUU---------GGGC- -5'
1646 5' -53.5 NC_001347.2 + 64741 0.74 0.751164
Target:  5'- cUCUCAucgugccgcagACUugAUGUGCCGCcGCCCGg -3'
miRNA:   3'- cAGAGU-----------UGAugUGCGUGGCGuUGGGC- -5'
1646 5' -53.5 NC_001347.2 + 77413 0.68 0.958389
Target:  5'- uGUCgCGGCcaaaGCAUGCACCaggugcugcGCGACCCGu -3'
miRNA:   3'- -CAGaGUUGa---UGUGCGUGG---------CGUUGGGC- -5'
1646 5' -53.5 NC_001347.2 + 78410 0.67 0.981005
Target:  5'- cGUCg-GGCUGCuGC-CGCCGCcACCCGg -3'
miRNA:   3'- -CAGagUUGAUG-UGcGUGGCGuUGGGC- -5'
1646 5' -53.5 NC_001347.2 + 86260 0.67 0.972923
Target:  5'- aUCUCGGCgcgcgaagcuucgGCgGCGUGCCGCuGACCCa -3'
miRNA:   3'- cAGAGUUGa------------UG-UGCGUGGCG-UUGGGc -5'
1646 5' -53.5 NC_001347.2 + 86354 0.75 0.702377
Target:  5'- -cCUCGGCUACugGCGUACCGUgGGCCCGc -3'
miRNA:   3'- caGAGUUGAUG--UGCGUGGCG-UUGGGC- -5'
1646 5' -53.5 NC_001347.2 + 86634 0.67 0.976507
Target:  5'- -cCUCAGCaaccguCACGUuCCGCGuCCCGg -3'
miRNA:   3'- caGAGUUGau----GUGCGuGGCGUuGGGC- -5'
1646 5' -53.5 NC_001347.2 + 89681 0.7 0.916345
Target:  5'- cGUCUCGACcGCACaaGCGCCG--GCCCc -3'
miRNA:   3'- -CAGAGUUGaUGUG--CGUGGCguUGGGc -5'
1646 5' -53.5 NC_001347.2 + 109777 0.66 0.982996
Target:  5'- aUCUCGccgaauuggaagGCguaugGCAgccCGCugCGCAACCCa -3'
miRNA:   3'- cAGAGU------------UGa----UGU---GCGugGCGUUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.