Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16460 | 5' | -57.8 | NC_004084.1 | + | 6150 | 0.66 | 0.611638 |
Target: 5'- aGCGCCGGggUUCCUGGcgauCGGGcUCCAg -3' miRNA: 3'- cUGCGGCUa-GAGGACCac--GCUC-AGGU- -5' |
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16460 | 5' | -57.8 | NC_004084.1 | + | 37056 | 0.66 | 0.590113 |
Target: 5'- cGAUGUCGAUgUUCUcGGUGuCGAGgUCCu -3' miRNA: 3'- -CUGCGGCUAgAGGA-CCAC-GCUC-AGGu -5' |
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16460 | 5' | -57.8 | NC_004084.1 | + | 53450 | 0.67 | 0.526599 |
Target: 5'- -cCGCCGAUCUCCUc--GUGGGUCg- -3' miRNA: 3'- cuGCGGCUAGAGGAccaCGCUCAGgu -5' |
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16460 | 5' | -57.8 | NC_004084.1 | + | 57654 | 0.68 | 0.485698 |
Target: 5'- cGACgaGCCGAUCggCCUGGUG---GUCCAg -3' miRNA: 3'- -CUG--CGGCUAGa-GGACCACgcuCAGGU- -5' |
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16460 | 5' | -57.8 | NC_004084.1 | + | 49881 | 0.68 | 0.465819 |
Target: 5'- gGACGUCGAUCUCgaGGU-CGGGUaCAg -3' miRNA: 3'- -CUGCGGCUAGAGgaCCAcGCUCAgGU- -5' |
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16460 | 5' | -57.8 | NC_004084.1 | + | 47701 | 0.73 | 0.240861 |
Target: 5'- aGCGCCGAaCUCgUGGUGCuccgcguAGUCCAg -3' miRNA: 3'- cUGCGGCUaGAGgACCACGc------UCAGGU- -5' |
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16460 | 5' | -57.8 | NC_004084.1 | + | 43215 | 1.08 | 0.00067 |
Target: 5'- aGACGCCGAUCUCCUGGUGCGAGUCCAg -3' miRNA: 3'- -CUGCGGCUAGAGGACCACGCUCAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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