Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16461 | 3' | -54.3 | NC_004084.1 | + | 43365 | 1.12 | 0.000788 |
Target: 5'- cGAACAUCACGCUCCAGGAGCACCACCu -3' miRNA: 3'- -CUUGUAGUGCGAGGUCCUCGUGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 41796 | 0.78 | 0.182228 |
Target: 5'- aGGGCGUCACGaucgacCUCgAGGAGC-CCGCCg -3' miRNA: 3'- -CUUGUAGUGC------GAGgUCCUCGuGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 56574 | 0.78 | 0.187243 |
Target: 5'- --cCGUCGCGCUgCAGGAGC-CaCACCg -3' miRNA: 3'- cuuGUAGUGCGAgGUCCUCGuG-GUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 13912 | 0.74 | 0.323129 |
Target: 5'- --cCAUCAUGCuggucUCCAcGGAGgACCACCg -3' miRNA: 3'- cuuGUAGUGCG-----AGGU-CCUCgUGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 38761 | 0.73 | 0.364735 |
Target: 5'- cGAACAguUCugGCUCCAcauGGA-CGCCAUCg -3' miRNA: 3'- -CUUGU--AGugCGAGGU---CCUcGUGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 55024 | 0.73 | 0.391418 |
Target: 5'- -uGCGUCucguugUGCUCgAGGAGCuCCGCCa -3' miRNA: 3'- cuUGUAGu-----GCGAGgUCCUCGuGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 16150 | 0.73 | 0.391418 |
Target: 5'- cGGugGUCGCGCUgCucGAGCAUCACUc -3' miRNA: 3'- -CUugUAGUGCGAgGucCUCGUGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 185 | 0.72 | 0.418392 |
Target: 5'- uGAAgGUCccagaagACGUUCCGGGAGC-CCGCa -3' miRNA: 3'- -CUUgUAG-------UGCGAGGUCCUCGuGGUGg -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 10495 | 0.72 | 0.419342 |
Target: 5'- cGAGCGUCuucacacgauaACGCUCCGuGAGCucAUCACCa -3' miRNA: 3'- -CUUGUAG-----------UGCGAGGUcCUCG--UGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 20590 | 0.72 | 0.428914 |
Target: 5'- aGAgGUCAUcCUCCAGGAGgGCCagACCg -3' miRNA: 3'- cUUgUAGUGcGAGGUCCUCgUGG--UGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 43107 | 0.71 | 0.458385 |
Target: 5'- cGACGaCugGCUCUGGGAGCAgUACg -3' miRNA: 3'- cUUGUaGugCGAGGUCCUCGUgGUGg -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 11025 | 0.71 | 0.499286 |
Target: 5'- --uCGUCGCGC-CCuGGAGC-UCGCCg -3' miRNA: 3'- cuuGUAGUGCGaGGuCCUCGuGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 27490 | 0.7 | 0.519277 |
Target: 5'- cGACGUCgacgaggcgaucgACGUcuUCCAGGAGgACCACg -3' miRNA: 3'- cUUGUAG-------------UGCG--AGGUCCUCgUGGUGg -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 29012 | 0.7 | 0.520338 |
Target: 5'- cAACcgCgACGCcCCAGGAGUgGCCGCCc -3' miRNA: 3'- cUUGuaG-UGCGaGGUCCUCG-UGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 43702 | 0.7 | 0.520338 |
Target: 5'- cAACGaucUCAacgaGCUCCAGGA-CGCCAUCg -3' miRNA: 3'- cUUGU---AGUg---CGAGGUCCUcGUGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 19686 | 0.7 | 0.552535 |
Target: 5'- cGGCAUCGCGUUCaccGAGCACUcCCa -3' miRNA: 3'- cUUGUAGUGCGAGgucCUCGUGGuGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 15748 | 0.7 | 0.556875 |
Target: 5'- uGAugAUgACGCU-CGGGAggacgucgucggacuGCGCCGCCg -3' miRNA: 3'- -CUugUAgUGCGAgGUCCU---------------CGUGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 57471 | 0.69 | 0.57433 |
Target: 5'- aGAugGccCGCGaccucCUCCGGGAGCGUCACCa -3' miRNA: 3'- -CUugUa-GUGC-----GAGGUCCUCGUGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 38516 | 0.68 | 0.651661 |
Target: 5'- cGAGCAUCGuucgaaguuccUGUUCUAcaccGGcGGCACCGCCg -3' miRNA: 3'- -CUUGUAGU-----------GCGAGGU----CC-UCGUGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 30944 | 0.68 | 0.651661 |
Target: 5'- cGACGUCGaGCUCgAGGA-CGCCgACCg -3' miRNA: 3'- cUUGUAGUgCGAGgUCCUcGUGG-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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