miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 3' -54.3 NC_004084.1 + 30944 0.68 0.651661
Target:  5'- cGACGUCGaGCUCgAGGA-CGCCgACCg -3'
miRNA:   3'- cUUGUAGUgCGAGgUCCUcGUGG-UGG- -5'
16461 3' -54.3 NC_004084.1 + 38516 0.68 0.651661
Target:  5'- cGAGCAUCGuucgaaguuccUGUUCUAcaccGGcGGCACCGCCg -3'
miRNA:   3'- -CUUGUAGU-----------GCGAGGU----CC-UCGUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 57471 0.69 0.57433
Target:  5'- aGAugGccCGCGaccucCUCCGGGAGCGUCACCa -3'
miRNA:   3'- -CUugUa-GUGC-----GAGGUCCUCGUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 15748 0.7 0.556875
Target:  5'- uGAugAUgACGCU-CGGGAggacgucgucggacuGCGCCGCCg -3'
miRNA:   3'- -CUugUAgUGCGAgGUCCU---------------CGUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 19686 0.7 0.552535
Target:  5'- cGGCAUCGCGUUCaccGAGCACUcCCa -3'
miRNA:   3'- cUUGUAGUGCGAGgucCUCGUGGuGG- -5'
16461 3' -54.3 NC_004084.1 + 29012 0.7 0.520338
Target:  5'- cAACcgCgACGCcCCAGGAGUgGCCGCCc -3'
miRNA:   3'- cUUGuaG-UGCGaGGUCCUCG-UGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 43702 0.7 0.520338
Target:  5'- cAACGaucUCAacgaGCUCCAGGA-CGCCAUCg -3'
miRNA:   3'- cUUGU---AGUg---CGAGGUCCUcGUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 27490 0.7 0.519277
Target:  5'- cGACGUCgacgaggcgaucgACGUcuUCCAGGAGgACCACg -3'
miRNA:   3'- cUUGUAG-------------UGCG--AGGUCCUCgUGGUGg -5'
16461 3' -54.3 NC_004084.1 + 11025 0.71 0.499286
Target:  5'- --uCGUCGCGC-CCuGGAGC-UCGCCg -3'
miRNA:   3'- cuuGUAGUGCGaGGuCCUCGuGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 43107 0.71 0.458385
Target:  5'- cGACGaCugGCUCUGGGAGCAgUACg -3'
miRNA:   3'- cUUGUaGugCGAGGUCCUCGUgGUGg -5'
16461 3' -54.3 NC_004084.1 + 20590 0.72 0.428914
Target:  5'- aGAgGUCAUcCUCCAGGAGgGCCagACCg -3'
miRNA:   3'- cUUgUAGUGcGAGGUCCUCgUGG--UGG- -5'
16461 3' -54.3 NC_004084.1 + 10495 0.72 0.419342
Target:  5'- cGAGCGUCuucacacgauaACGCUCCGuGAGCucAUCACCa -3'
miRNA:   3'- -CUUGUAG-----------UGCGAGGUcCUCG--UGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 185 0.72 0.418392
Target:  5'- uGAAgGUCccagaagACGUUCCGGGAGC-CCGCa -3'
miRNA:   3'- -CUUgUAG-------UGCGAGGUCCUCGuGGUGg -5'
16461 3' -54.3 NC_004084.1 + 16150 0.73 0.391418
Target:  5'- cGGugGUCGCGCUgCucGAGCAUCACUc -3'
miRNA:   3'- -CUugUAGUGCGAgGucCUCGUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 55024 0.73 0.391418
Target:  5'- -uGCGUCucguugUGCUCgAGGAGCuCCGCCa -3'
miRNA:   3'- cuUGUAGu-----GCGAGgUCCUCGuGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 38761 0.73 0.364735
Target:  5'- cGAACAguUCugGCUCCAcauGGA-CGCCAUCg -3'
miRNA:   3'- -CUUGU--AGugCGAGGU---CCUcGUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 13912 0.74 0.323129
Target:  5'- --cCAUCAUGCuggucUCCAcGGAGgACCACCg -3'
miRNA:   3'- cuuGUAGUGCG-----AGGU-CCUCgUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 56574 0.78 0.187243
Target:  5'- --cCGUCGCGCUgCAGGAGC-CaCACCg -3'
miRNA:   3'- cuuGUAGUGCGAgGUCCUCGuG-GUGG- -5'
16461 3' -54.3 NC_004084.1 + 41796 0.78 0.182228
Target:  5'- aGGGCGUCACGaucgacCUCgAGGAGC-CCGCCg -3'
miRNA:   3'- -CUUGUAGUGC------GAGgUCCUCGuGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 43365 1.12 0.000788
Target:  5'- cGAACAUCACGCUCCAGGAGCACCACCu -3'
miRNA:   3'- -CUUGUAGUGCGAGGUCCUCGUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.