miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 3' -54.3 NC_004084.1 + 185 0.72 0.418392
Target:  5'- uGAAgGUCccagaagACGUUCCGGGAGC-CCGCa -3'
miRNA:   3'- -CUUgUAG-------UGCGAGGUCCUCGuGGUGg -5'
16461 3' -54.3 NC_004084.1 + 1022 0.66 0.749171
Target:  5'- cGACGUCgACGCgaUCGGGGGCGCgcucgaguuCGCCg -3'
miRNA:   3'- cUUGUAG-UGCGa-GGUCCUCGUG---------GUGG- -5'
16461 3' -54.3 NC_004084.1 + 1870 0.66 0.769813
Target:  5'- cGACGUCGC-CUCCuGGAcUGCCACg -3'
miRNA:   3'- cUUGUAGUGcGAGGuCCUcGUGGUGg -5'
16461 3' -54.3 NC_004084.1 + 3310 0.67 0.706535
Target:  5'- aGAC-UCAacaGCUCCAGGAGgAgCGCg -3'
miRNA:   3'- cUUGuAGUg--CGAGGUCCUCgUgGUGg -5'
16461 3' -54.3 NC_004084.1 + 4319 0.67 0.695662
Target:  5'- cGGGCGUCGuCGagUCC-GGAGCGuucuCCACCg -3'
miRNA:   3'- -CUUGUAGU-GCg-AGGuCCUCGU----GGUGG- -5'
16461 3' -54.3 NC_004084.1 + 9428 0.67 0.717334
Target:  5'- cGAGCA-CGCGCUCUcGGuGCugCgggacGCCg -3'
miRNA:   3'- -CUUGUaGUGCGAGGuCCuCGugG-----UGG- -5'
16461 3' -54.3 NC_004084.1 + 10495 0.72 0.419342
Target:  5'- cGAGCGUCuucacacgauaACGCUCCGuGAGCucAUCACCa -3'
miRNA:   3'- -CUUGUAG-----------UGCGAGGUcCUCG--UGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 10700 0.66 0.759558
Target:  5'- gGGACAaaUCugGaCUaCGcGGAGCACCACg -3'
miRNA:   3'- -CUUGU--AGugC-GAgGU-CCUCGUGGUGg -5'
16461 3' -54.3 NC_004084.1 + 11025 0.71 0.499286
Target:  5'- --uCGUCGCGC-CCuGGAGC-UCGCCg -3'
miRNA:   3'- cuuGUAGUGCGaGGuCCUCGuGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 13912 0.74 0.323129
Target:  5'- --cCAUCAUGCuggucUCCAcGGAGgACCACCg -3'
miRNA:   3'- cuuGUAGUGCG-----AGGU-CCUCgUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 15444 0.67 0.684727
Target:  5'- aGGCGUUGCGCUCUcGGGGaCACuCGCg -3'
miRNA:   3'- cUUGUAGUGCGAGGuCCUC-GUG-GUGg -5'
16461 3' -54.3 NC_004084.1 + 15748 0.7 0.556875
Target:  5'- uGAugAUgACGCU-CGGGAggacgucgucggacuGCGCCGCCg -3'
miRNA:   3'- -CUugUAgUGCGAgGUCCU---------------CGUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 16150 0.73 0.391418
Target:  5'- cGGugGUCGCGCUgCucGAGCAUCACUc -3'
miRNA:   3'- -CUugUAGUGCGAgGucCUCGUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 19686 0.7 0.552535
Target:  5'- cGGCAUCGCGUUCaccGAGCACUcCCa -3'
miRNA:   3'- cUUGUAGUGCGAGgucCUCGUGGuGG- -5'
16461 3' -54.3 NC_004084.1 + 20590 0.72 0.428914
Target:  5'- aGAgGUCAUcCUCCAGGAGgGCCagACCg -3'
miRNA:   3'- cUUgUAGUGcGAGGUCCUCgUGG--UGG- -5'
16461 3' -54.3 NC_004084.1 + 22292 0.66 0.759558
Target:  5'- cGAACGUUGCacaccauaccaGC-CCGGGGGCcguGCCACUc -3'
miRNA:   3'- -CUUGUAGUG-----------CGaGGUCCUCG---UGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 22377 0.66 0.78988
Target:  5'- cGACAUCA---UCCAGGAGgucgaaCGCUACCg -3'
miRNA:   3'- cUUGUAGUgcgAGGUCCUC------GUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 22850 0.68 0.673741
Target:  5'- cGAACGUCGuuguagagcUGCgUCCGGcGGCACuCGCCg -3'
miRNA:   3'- -CUUGUAGU---------GCG-AGGUCcUCGUG-GUGG- -5'
16461 3' -54.3 NC_004084.1 + 27490 0.7 0.519277
Target:  5'- cGACGUCgacgaggcgaucgACGUcuUCCAGGAGgACCACg -3'
miRNA:   3'- cUUGUAG-------------UGCG--AGGUCCUCgUGGUGg -5'
16461 3' -54.3 NC_004084.1 + 27622 0.67 0.72163
Target:  5'- cGACAUCugGUucgacgcagaagugaUCgAGGGGaUGCCGCCg -3'
miRNA:   3'- cUUGUAGugCG---------------AGgUCCUC-GUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.