miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 3' -54.3 NC_004084.1 + 43365 1.12 0.000788
Target:  5'- cGAACAUCACGCUCCAGGAGCACCACCu -3'
miRNA:   3'- -CUUGUAGUGCGAGGUCCUCGUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 15444 0.67 0.684727
Target:  5'- aGGCGUUGCGCUCUcGGGGaCACuCGCg -3'
miRNA:   3'- cUUGUAGUGCGAGGuCCUC-GUG-GUGg -5'
16461 3' -54.3 NC_004084.1 + 4319 0.67 0.695662
Target:  5'- cGGGCGUCGuCGagUCC-GGAGCGuucuCCACCg -3'
miRNA:   3'- -CUUGUAGU-GCg-AGGuCCUCGU----GGUGG- -5'
16461 3' -54.3 NC_004084.1 + 3310 0.67 0.706535
Target:  5'- aGAC-UCAacaGCUCCAGGAGgAgCGCg -3'
miRNA:   3'- cUUGuAGUg--CGAGGUCCUCgUgGUGg -5'
16461 3' -54.3 NC_004084.1 + 27622 0.67 0.72163
Target:  5'- cGACAUCugGUucgacgcagaagugaUCgAGGGGaUGCCGCCg -3'
miRNA:   3'- cUUGUAGugCG---------------AGgUCCUC-GUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 10700 0.66 0.759558
Target:  5'- gGGACAaaUCugGaCUaCGcGGAGCACCACg -3'
miRNA:   3'- -CUUGU--AGugC-GAgGU-CCUCGUGGUGg -5'
16461 3' -54.3 NC_004084.1 + 1870 0.66 0.769813
Target:  5'- cGACGUCGC-CUCCuGGAcUGCCACg -3'
miRNA:   3'- cUUGUAGUGcGAGGuCCUcGUGGUGg -5'
16461 3' -54.3 NC_004084.1 + 56101 0.66 0.779924
Target:  5'- gGAGC-UCAacaagauCUCCGGcGAGCACgACCa -3'
miRNA:   3'- -CUUGuAGUgc-----GAGGUC-CUCGUGgUGG- -5'
16461 3' -54.3 NC_004084.1 + 22377 0.66 0.78988
Target:  5'- cGACAUCA---UCCAGGAGgucgaaCGCUACCg -3'
miRNA:   3'- cUUGUAGUgcgAGGUCCUC------GUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 49117 0.67 0.684727
Target:  5'- aGAGCGUCACGaUCUgaAGGAGCcggACCAg- -3'
miRNA:   3'- -CUUGUAGUGCgAGG--UCCUCG---UGGUgg -5'
16461 3' -54.3 NC_004084.1 + 31363 0.68 0.662715
Target:  5'- cGAGCAUCGCGCgaucgacaCCAGaGAGUucaGCCcggcgaagGCCg -3'
miRNA:   3'- -CUUGUAGUGCGa-------GGUC-CUCG---UGG--------UGG- -5'
16461 3' -54.3 NC_004084.1 + 57471 0.69 0.57433
Target:  5'- aGAugGccCGCGaccucCUCCGGGAGCGUCACCa -3'
miRNA:   3'- -CUugUa-GUGC-----GAGGUCCUCGUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 41796 0.78 0.182228
Target:  5'- aGGGCGUCACGaucgacCUCgAGGAGC-CCGCCg -3'
miRNA:   3'- -CUUGUAGUGC------GAGgUCCUCGuGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 13912 0.74 0.323129
Target:  5'- --cCAUCAUGCuggucUCCAcGGAGgACCACCg -3'
miRNA:   3'- cuuGUAGUGCG-----AGGU-CCUCgUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 10495 0.72 0.419342
Target:  5'- cGAGCGUCuucacacgauaACGCUCCGuGAGCucAUCACCa -3'
miRNA:   3'- -CUUGUAG-----------UGCGAGGUcCUCG--UGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 20590 0.72 0.428914
Target:  5'- aGAgGUCAUcCUCCAGGAGgGCCagACCg -3'
miRNA:   3'- cUUgUAGUGcGAGGUCCUCgUGG--UGG- -5'
16461 3' -54.3 NC_004084.1 + 43107 0.71 0.458385
Target:  5'- cGACGaCugGCUCUGGGAGCAgUACg -3'
miRNA:   3'- cUUGUaGugCGAGGUCCUCGUgGUGg -5'
16461 3' -54.3 NC_004084.1 + 27490 0.7 0.519277
Target:  5'- cGACGUCgacgaggcgaucgACGUcuUCCAGGAGgACCACg -3'
miRNA:   3'- cUUGUAG-------------UGCG--AGGUCCUCgUGGUGg -5'
16461 3' -54.3 NC_004084.1 + 29012 0.7 0.520338
Target:  5'- cAACcgCgACGCcCCAGGAGUgGCCGCCc -3'
miRNA:   3'- cUUGuaG-UGCGaGGUCCUCG-UGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 19686 0.7 0.552535
Target:  5'- cGGCAUCGCGUUCaccGAGCACUcCCa -3'
miRNA:   3'- cUUGUAGUGCGAGgucCUCGUGGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.