miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 3' -54.3 NC_004084.1 + 30296 0.66 0.78988
Target:  5'- aGGACGUCauugacGCGCUCgucgAGGcGCACC-CCg -3'
miRNA:   3'- -CUUGUAG------UGCGAGg---UCCuCGUGGuGG- -5'
16461 3' -54.3 NC_004084.1 + 16150 0.73 0.391418
Target:  5'- cGGugGUCGCGCUgCucGAGCAUCACUc -3'
miRNA:   3'- -CUugUAGUGCGAgGucCUCGUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 55024 0.73 0.391418
Target:  5'- -uGCGUCucguugUGCUCgAGGAGCuCCGCCa -3'
miRNA:   3'- cuUGUAGu-----GCGAGgUCCUCGuGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 56574 0.78 0.187243
Target:  5'- --cCGUCGCGCUgCAGGAGC-CaCACCg -3'
miRNA:   3'- cuuGUAGUGCGAgGUCCUCGuG-GUGG- -5'
16461 3' -54.3 NC_004084.1 + 9428 0.67 0.717334
Target:  5'- cGAGCA-CGCGCUCUcGGuGCugCgggacGCCg -3'
miRNA:   3'- -CUUGUaGUGCGAGGuCCuCGugG-----UGG- -5'
16461 3' -54.3 NC_004084.1 + 29261 0.67 0.695662
Target:  5'- cGAACGgccCGCGCgaCCAcaccAGCACCGCCg -3'
miRNA:   3'- -CUUGUa--GUGCGa-GGUcc--UCGUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 29099 0.67 0.684727
Target:  5'- gGGACGUCcuccGCGCcaUCCAGGuAGCGuacCCACa -3'
miRNA:   3'- -CUUGUAG----UGCG--AGGUCC-UCGU---GGUGg -5'
16461 3' -54.3 NC_004084.1 + 22850 0.68 0.673741
Target:  5'- cGAACGUCGuuguagagcUGCgUCCGGcGGCACuCGCCg -3'
miRNA:   3'- -CUUGUAGU---------GCG-AGGUCcUCGUG-GUGG- -5'
16461 3' -54.3 NC_004084.1 + 15748 0.7 0.556875
Target:  5'- uGAugAUgACGCU-CGGGAggacgucgucggacuGCGCCGCCg -3'
miRNA:   3'- -CUugUAgUGCGAgGUCCU---------------CGUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 43702 0.7 0.520338
Target:  5'- cAACGaucUCAacgaGCUCCAGGA-CGCCAUCg -3'
miRNA:   3'- cUUGU---AGUg---CGAGGUCCUcGUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 30944 0.68 0.651661
Target:  5'- cGACGUCGaGCUCgAGGA-CGCCgACCg -3'
miRNA:   3'- cUUGUAGUgCGAGgUCCUcGUGG-UGG- -5'
16461 3' -54.3 NC_004084.1 + 29034 0.66 0.779924
Target:  5'- cGGCAUCACcUUCCAGGAGgGaCGCg -3'
miRNA:   3'- cUUGUAGUGcGAGGUCCUCgUgGUGg -5'
16461 3' -54.3 NC_004084.1 + 11025 0.71 0.499286
Target:  5'- --uCGUCGCGC-CCuGGAGC-UCGCCg -3'
miRNA:   3'- cuuGUAGUGCGaGGuCCUCGuGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 22292 0.66 0.759558
Target:  5'- cGAACGUUGCacaccauaccaGC-CCGGGGGCcguGCCACUc -3'
miRNA:   3'- -CUUGUAGUG-----------CGaGGUCCUCG---UGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 38516 0.68 0.651661
Target:  5'- cGAGCAUCGuucgaaguuccUGUUCUAcaccGGcGGCACCGCCg -3'
miRNA:   3'- -CUUGUAGU-----------GCGAGGU----CC-UCGUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 185 0.72 0.418392
Target:  5'- uGAAgGUCccagaagACGUUCCGGGAGC-CCGCa -3'
miRNA:   3'- -CUUgUAG-------UGCGAGGUCCUCGuGGUGg -5'
16461 3' -54.3 NC_004084.1 + 38761 0.73 0.364735
Target:  5'- cGAACAguUCugGCUCCAcauGGA-CGCCAUCg -3'
miRNA:   3'- -CUUGU--AGugCGAGGU---CCUcGUGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 1022 0.66 0.749171
Target:  5'- cGACGUCgACGCgaUCGGGGGCGCgcucgaguuCGCCg -3'
miRNA:   3'- cUUGUAG-UGCGa-GGUCCUCGUG---------GUGG- -5'
16461 3' -54.3 NC_004084.1 + 55206 0.67 0.695662
Target:  5'- ---aGUCAC-CUCCAGugguGAGCuucGCCACCg -3'
miRNA:   3'- cuugUAGUGcGAGGUC----CUCG---UGGUGG- -5'
16461 3' -54.3 NC_004084.1 + 34710 0.66 0.78988
Target:  5'- -cGCGUCcauCGCcgUCUGGGAGaCGCuCACCg -3'
miRNA:   3'- cuUGUAGu--GCG--AGGUCCUC-GUG-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.