Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16461 | 3' | -54.3 | NC_004084.1 | + | 22377 | 0.66 | 0.78988 |
Target: 5'- cGACAUCA---UCCAGGAGgucgaaCGCUACCg -3' miRNA: 3'- cUUGUAGUgcgAGGUCCUC------GUGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 19686 | 0.7 | 0.552535 |
Target: 5'- cGGCAUCGCGUUCaccGAGCACUcCCa -3' miRNA: 3'- cUUGUAGUGCGAGgucCUCGUGGuGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 29012 | 0.7 | 0.520338 |
Target: 5'- cAACcgCgACGCcCCAGGAGUgGCCGCCc -3' miRNA: 3'- cUUGuaG-UGCGaGGUCCUCG-UGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 27490 | 0.7 | 0.519277 |
Target: 5'- cGACGUCgacgaggcgaucgACGUcuUCCAGGAGgACCACg -3' miRNA: 3'- cUUGUAG-------------UGCG--AGGUCCUCgUGGUGg -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 43107 | 0.71 | 0.458385 |
Target: 5'- cGACGaCugGCUCUGGGAGCAgUACg -3' miRNA: 3'- cUUGUaGugCGAGGUCCUCGUgGUGg -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 20590 | 0.72 | 0.428914 |
Target: 5'- aGAgGUCAUcCUCCAGGAGgGCCagACCg -3' miRNA: 3'- cUUgUAGUGcGAGGUCCUCgUGG--UGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 10495 | 0.72 | 0.419342 |
Target: 5'- cGAGCGUCuucacacgauaACGCUCCGuGAGCucAUCACCa -3' miRNA: 3'- -CUUGUAG-----------UGCGAGGUcCUCG--UGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 13912 | 0.74 | 0.323129 |
Target: 5'- --cCAUCAUGCuggucUCCAcGGAGgACCACCg -3' miRNA: 3'- cuuGUAGUGCG-----AGGU-CCUCgUGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 41796 | 0.78 | 0.182228 |
Target: 5'- aGGGCGUCACGaucgacCUCgAGGAGC-CCGCCg -3' miRNA: 3'- -CUUGUAGUGC------GAGgUCCUCGuGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 57471 | 0.69 | 0.57433 |
Target: 5'- aGAugGccCGCGaccucCUCCGGGAGCGUCACCa -3' miRNA: 3'- -CUugUa-GUGC-----GAGGUCCUCGUGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 31363 | 0.68 | 0.662715 |
Target: 5'- cGAGCAUCGCGCgaucgacaCCAGaGAGUucaGCCcggcgaagGCCg -3' miRNA: 3'- -CUUGUAGUGCGa-------GGUC-CUCG---UGG--------UGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 56101 | 0.66 | 0.779924 |
Target: 5'- gGAGC-UCAacaagauCUCCGGcGAGCACgACCa -3' miRNA: 3'- -CUUGuAGUgc-----GAGGUC-CUCGUGgUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 1870 | 0.66 | 0.769813 |
Target: 5'- cGACGUCGC-CUCCuGGAcUGCCACg -3' miRNA: 3'- cUUGUAGUGcGAGGuCCUcGUGGUGg -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 10700 | 0.66 | 0.759558 |
Target: 5'- gGGACAaaUCugGaCUaCGcGGAGCACCACg -3' miRNA: 3'- -CUUGU--AGugC-GAgGU-CCUCGUGGUGg -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 27622 | 0.67 | 0.72163 |
Target: 5'- cGACAUCugGUucgacgcagaagugaUCgAGGGGaUGCCGCCg -3' miRNA: 3'- cUUGUAGugCG---------------AGgUCCUC-GUGGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 3310 | 0.67 | 0.706535 |
Target: 5'- aGAC-UCAacaGCUCCAGGAGgAgCGCg -3' miRNA: 3'- cUUGuAGUg--CGAGGUCCUCgUgGUGg -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 4319 | 0.67 | 0.695662 |
Target: 5'- cGGGCGUCGuCGagUCC-GGAGCGuucuCCACCg -3' miRNA: 3'- -CUUGUAGU-GCg-AGGuCCUCGU----GGUGG- -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 15444 | 0.67 | 0.684727 |
Target: 5'- aGGCGUUGCGCUCUcGGGGaCACuCGCg -3' miRNA: 3'- cUUGUAGUGCGAGGuCCUC-GUG-GUGg -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 49117 | 0.67 | 0.684727 |
Target: 5'- aGAGCGUCACGaUCUgaAGGAGCcggACCAg- -3' miRNA: 3'- -CUUGUAGUGCgAGG--UCCUCG---UGGUgg -5' |
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16461 | 3' | -54.3 | NC_004084.1 | + | 43365 | 1.12 | 0.000788 |
Target: 5'- cGAACAUCACGCUCCAGGAGCACCACCu -3' miRNA: 3'- -CUUGUAGUGCGAGGUCCUCGUGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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