miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 5' -58.9 NC_004084.1 + 904 0.66 0.612646
Target:  5'- gCUGUCGGCGUcgUCGGaguucGCUGCGGCc -3'
miRNA:   3'- -GGCAGCUGCG--AGCUgcu--CGGCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 1179 0.66 0.612646
Target:  5'- aUCGcCGACGCggUCGugGAcguaGUCGCguaAGCGg -3'
miRNA:   3'- -GGCaGCUGCG--AGCugCU----CGGCG---UCGC- -5'
16461 5' -58.9 NC_004084.1 + 41362 0.66 0.612646
Target:  5'- aCCGcuugCGACGUcagucaccgcaUCGACGGGC-GCAGaCGc -3'
miRNA:   3'- -GGCa---GCUGCG-----------AGCUGCUCGgCGUC-GC- -5'
16461 5' -58.9 NC_004084.1 + 47263 0.66 0.612646
Target:  5'- cUCGcCGGCGCcuacuacgaggUCGACGAcGUC-CAGCGg -3'
miRNA:   3'- -GGCaGCUGCG-----------AGCUGCU-CGGcGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 29470 0.66 0.612646
Target:  5'- cUCGUagacGCGCUCGAgGGuGCgGCGGUGg -3'
miRNA:   3'- -GGCAgc--UGCGAGCUgCU-CGgCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 40413 0.66 0.609499
Target:  5'- gCCGUCGACgaaaaagaggagcuGUUCGAgauCGAgGCCGagGGCGa -3'
miRNA:   3'- -GGCAGCUG--------------CGAGCU---GCU-CGGCg-UCGC- -5'
16461 5' -58.9 NC_004084.1 + 50955 0.66 0.606354
Target:  5'- gCCGUCGcCGCUCGAgucgccgucggacucCGAGgucucgccaCCGuCGGCa -3'
miRNA:   3'- -GGCAGCuGCGAGCU---------------GCUC---------GGC-GUCGc -5'
16461 5' -58.9 NC_004084.1 + 45986 0.66 0.602163
Target:  5'- aCGUCGACGCgaucauggaCGGCGAGaaGaCGGUc -3'
miRNA:   3'- gGCAGCUGCGa--------GCUGCUCggC-GUCGc -5'
16461 5' -58.9 NC_004084.1 + 16855 0.66 0.600069
Target:  5'- cCCGUCGAUGaUCGcaagugggaucuCGAGC-GCGGCGu -3'
miRNA:   3'- -GGCAGCUGCgAGCu-----------GCUCGgCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 37556 0.66 0.595883
Target:  5'- aCCGUgGA-GUggaccgaucaacucgUCGACGAGCCGaGGCa -3'
miRNA:   3'- -GGCAgCUgCG---------------AGCUGCUCGGCgUCGc -5'
16461 5' -58.9 NC_004084.1 + 3833 0.66 0.591703
Target:  5'- uUCGUCGACGC-CGACGAcgGCUcCAcCGg -3'
miRNA:   3'- -GGCAGCUGCGaGCUGCU--CGGcGUcGC- -5'
16461 5' -58.9 NC_004084.1 + 51983 0.66 0.591703
Target:  5'- aCCaGUgGGCGUUCGAacUGaAGCCGCGGg- -3'
miRNA:   3'- -GG-CAgCUGCGAGCU--GC-UCGGCGUCgc -5'
16461 5' -58.9 NC_004084.1 + 686 0.66 0.581274
Target:  5'- uUCGUCGACGUccUCGAgCGGuGCaCGCAcuguGCGu -3'
miRNA:   3'- -GGCAGCUGCG--AGCU-GCU-CG-GCGU----CGC- -5'
16461 5' -58.9 NC_004084.1 + 44947 0.66 0.581274
Target:  5'- uUCGUCGACGagaaCGGCGuucGUCGCgAGUGg -3'
miRNA:   3'- -GGCAGCUGCga--GCUGCu--CGGCG-UCGC- -5'
16461 5' -58.9 NC_004084.1 + 56478 0.66 0.570883
Target:  5'- uCCGU-GACGCUgCGAagGAGauGCGGCGu -3'
miRNA:   3'- -GGCAgCUGCGA-GCUg-CUCggCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 49848 0.66 0.570883
Target:  5'- cUCGUCGACGUcgCGAgCGAGaUC-CGGCGa -3'
miRNA:   3'- -GGCAGCUGCGa-GCU-GCUC-GGcGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 7388 0.66 0.570883
Target:  5'- -aG-CGAcCGCaUCGACGAGCUGagcaaGGCGa -3'
miRNA:   3'- ggCaGCU-GCG-AGCUGCUCGGCg----UCGC- -5'
16461 5' -58.9 NC_004084.1 + 40525 0.66 0.570883
Target:  5'- aCGUCGGCGUcuUCaGACGAGCuCGaaaGGUc -3'
miRNA:   3'- gGCAGCUGCG--AG-CUGCUCG-GCg--UCGc -5'
16461 5' -58.9 NC_004084.1 + 48621 0.66 0.570883
Target:  5'- gCCGUgcauguggaGGCGCugUCGaACG-GCCGCAGCc -3'
miRNA:   3'- -GGCAg--------CUGCG--AGC-UGCuCGGCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 55252 0.66 0.570883
Target:  5'- gCCGUCGACGacgUCuACG-GUCgGCGGCGu -3'
miRNA:   3'- -GGCAGCUGCg--AGcUGCuCGG-CGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.