miRNA display CGI


Results 21 - 40 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 5' -58.9 NC_004084.1 + 56478 0.66 0.570883
Target:  5'- uCCGU-GACGCUgCGAagGAGauGCGGCGu -3'
miRNA:   3'- -GGCAgCUGCGA-GCUg-CUCggCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 44947 0.66 0.581274
Target:  5'- uUCGUCGACGagaaCGGCGuucGUCGCgAGUGg -3'
miRNA:   3'- -GGCAGCUGCga--GCUGCu--CGGCG-UCGC- -5'
16461 5' -58.9 NC_004084.1 + 3833 0.66 0.591703
Target:  5'- uUCGUCGACGC-CGACGAcgGCUcCAcCGg -3'
miRNA:   3'- -GGCAGCUGCGaGCUGCU--CGGcGUcGC- -5'
16461 5' -58.9 NC_004084.1 + 45986 0.66 0.602163
Target:  5'- aCGUCGACGCgaucauggaCGGCGAGaaGaCGGUc -3'
miRNA:   3'- gGCAGCUGCGa--------GCUGCUCggC-GUCGc -5'
16461 5' -58.9 NC_004084.1 + 37556 0.66 0.595883
Target:  5'- aCCGUgGA-GUggaccgaucaacucgUCGACGAGCCGaGGCa -3'
miRNA:   3'- -GGCAgCUgCG---------------AGCUGCUCGGCgUCGc -5'
16461 5' -58.9 NC_004084.1 + 16855 0.66 0.600069
Target:  5'- cCCGUCGAUGaUCGcaagugggaucuCGAGC-GCGGCGu -3'
miRNA:   3'- -GGCAGCUGCgAGCu-----------GCUCGgCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 17213 0.67 0.529844
Target:  5'- -aGUCGACGCUCGGucaaacaccgcuCGGuGaaGCAGCa -3'
miRNA:   3'- ggCAGCUGCGAGCU------------GCU-CggCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 28948 0.67 0.508728
Target:  5'- gCGUCGACaGCgUCGAUGGgcaucgcgcccacGCCGCGuucGCGg -3'
miRNA:   3'- gGCAGCUG-CG-AGCUGCU-------------CGGCGU---CGC- -5'
16461 5' -58.9 NC_004084.1 + 34788 0.67 0.518741
Target:  5'- aCCGcaggaUGACGcCUCGACGGGCCugacgcuucgagcGCAGUu -3'
miRNA:   3'- -GGCa----GCUGC-GAGCUGCUCGG-------------CGUCGc -5'
16461 5' -58.9 NC_004084.1 + 28171 0.67 0.519746
Target:  5'- uCCGuccUCGGCcuGUUCGACGucGCCGCGGaCa -3'
miRNA:   3'- -GGC---AGCUG--CGAGCUGCu-CGGCGUC-Gc -5'
16461 5' -58.9 NC_004084.1 + 41311 0.67 0.520753
Target:  5'- aCGUCGAgGCUaucgauggagggcagGACGAuGCCugagGCAGCGa -3'
miRNA:   3'- gGCAGCUgCGAg--------------CUGCU-CGG----CGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 41908 0.67 0.529844
Target:  5'- aCCG-CGGCGCgCGAuCGccuGCUGUGGCGa -3'
miRNA:   3'- -GGCaGCUGCGaGCU-GCu--CGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 8778 0.67 0.540012
Target:  5'- aCGcCGACuccauCUCGACgGAGCC-CGGCGa -3'
miRNA:   3'- gGCaGCUGc----GAGCUG-CUCGGcGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 5476 0.67 0.54922
Target:  5'- aCGaCGACGC-CGACGGccagaucGUCGCAGuCGa -3'
miRNA:   3'- gGCaGCUGCGaGCUGCU-------CGGCGUC-GC- -5'
16461 5' -58.9 NC_004084.1 + 7806 0.67 0.550246
Target:  5'- aCCGUCGACGacCUCGACGcuGGagGCAcGCu -3'
miRNA:   3'- -GGCAGCUGC--GAGCUGC--UCggCGU-CGc -5'
16461 5' -58.9 NC_004084.1 + 56609 0.67 0.550246
Target:  5'- gUCGUCGcCGgUCGGCGAGUucgccggauCGUGGCu -3'
miRNA:   3'- -GGCAGCuGCgAGCUGCUCG---------GCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 42726 0.67 0.550246
Target:  5'- gCGUCGGCGagUUGAUcGGCUGCgAGCGc -3'
miRNA:   3'- gGCAGCUGCg-AGCUGcUCGGCG-UCGC- -5'
16461 5' -58.9 NC_004084.1 + 49072 0.67 0.550246
Target:  5'- aCCGUCGACGUgCGACG-GUCGgGagaggucucGCGu -3'
miRNA:   3'- -GGCAGCUGCGaGCUGCuCGGCgU---------CGC- -5'
16461 5' -58.9 NC_004084.1 + 55346 0.67 0.550246
Target:  5'- aCGUCGACGagcggcccgUCGACGAGUUccucgaggGUGGCGa -3'
miRNA:   3'- gGCAGCUGCg--------AGCUGCUCGG--------CGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 44327 0.67 0.529844
Target:  5'- gCCGccaCGACGacaUCGACGucuacgucGGUCGCGGUGa -3'
miRNA:   3'- -GGCa--GCUGCg--AGCUGC--------UCGGCGUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.