Results 1 - 20 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16461 | 5' | -58.9 | NC_004084.1 | + | 43399 | 1.09 | 0.000615 |
Target: 5'- gCCGUCGACGCUCGACGAGCCGCAGCGc -3' miRNA: 3'- -GGCAGCUGCGAGCUGCUCGGCGUCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 58126 | 0.77 | 0.123809 |
Target: 5'- cUCGUCGGCGgUCGucguCGAGCCGCcGUGa -3' miRNA: 3'- -GGCAGCUGCgAGCu---GCUCGGCGuCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 55060 | 0.75 | 0.169893 |
Target: 5'- aCCGUCGACGCacgUCGACGA-CCaauCGGCGg -3' miRNA: 3'- -GGCAGCUGCG---AGCUGCUcGGc--GUCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 31111 | 0.75 | 0.18839 |
Target: 5'- aCgGUCGAauaucaGCUCGuCGAGCCGC-GCGc -3' miRNA: 3'- -GgCAGCUg-----CGAGCuGCUCGGCGuCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 10227 | 0.74 | 0.219448 |
Target: 5'- cCCGUCGcCGCUUGAggucgccuggUGAGUCGCGGuCGg -3' miRNA: 3'- -GGCAGCuGCGAGCU----------GCUCGGCGUC-GC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 10530 | 0.74 | 0.208637 |
Target: 5'- aCCGUCGACGUU-GcCGAGCCaGCGGaCGa -3' miRNA: 3'- -GGCAGCUGCGAgCuGCUCGG-CGUC-GC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 2288 | 0.74 | 0.198288 |
Target: 5'- -gGUCGACGC-CGACGAcaCUGCGGCGc -3' miRNA: 3'- ggCAGCUGCGaGCUGCUc-GGCGUCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 20056 | 0.74 | 0.193284 |
Target: 5'- -aGUCGAUGCUgucgauacCGACGAcGCCGgAGCGa -3' miRNA: 3'- ggCAGCUGCGA--------GCUGCU-CGGCgUCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 17047 | 0.73 | 0.254772 |
Target: 5'- cCCGUCGAUGCggUGACuGAcGUCGCAaGCGg -3' miRNA: 3'- -GGCAGCUGCGa-GCUG-CU-CGGCGU-CGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 9913 | 0.73 | 0.248575 |
Target: 5'- aCGUCcaagacaagaGCGcCUCGACGAGCCuCAGCGa -3' miRNA: 3'- gGCAGc---------UGC-GAGCUGCUCGGcGUCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 57645 | 0.72 | 0.274121 |
Target: 5'- gCGUCG-C-CUCGACGAGCCGauCGGCc -3' miRNA: 3'- gGCAGCuGcGAGCUGCUCGGC--GUCGc -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 18302 | 0.72 | 0.280827 |
Target: 5'- aCCGUCGGC-CUCGuaggacuCGaAGCCGCuGGCGu -3' miRNA: 3'- -GGCAGCUGcGAGCu------GC-UCGGCG-UCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 19089 | 0.72 | 0.280827 |
Target: 5'- aCGUCGACG-UCGAUcAGCacCGCGGCGg -3' miRNA: 3'- gGCAGCUGCgAGCUGcUCG--GCGUCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 9406 | 0.71 | 0.308955 |
Target: 5'- aCGUCGACGCgcuugccgaUGACGAGCaCGC-GCu -3' miRNA: 3'- gGCAGCUGCGa--------GCUGCUCG-GCGuCGc -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 56114 | 0.71 | 0.316314 |
Target: 5'- cUCGUCGACG-UCG-UGcGCCGCAGUGu -3' miRNA: 3'- -GGCAGCUGCgAGCuGCuCGGCGUCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 12214 | 0.71 | 0.32305 |
Target: 5'- aUCGUCGACGCaucCGACGAcgaucucGCCGCcuaccAGCu -3' miRNA: 3'- -GGCAGCUGCGa--GCUGCU-------CGGCG-----UCGc -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 42201 | 0.71 | 0.308955 |
Target: 5'- uCCGUCGACGaaCUCGcguucaACGAGUCGaAGCGc -3' miRNA: 3'- -GGCAGCUGC--GAGC------UGCUCGGCgUCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 36822 | 0.71 | 0.308955 |
Target: 5'- gCGUCGACGaacgccgaUCGaACGAGCCGCGa-- -3' miRNA: 3'- gGCAGCUGCg-------AGC-UGCUCGGCGUcgc -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 57408 | 0.71 | 0.308955 |
Target: 5'- gCGUCGACGUcgcCGGCGAGCuCGaGGUGg -3' miRNA: 3'- gGCAGCUGCGa--GCUGCUCG-GCgUCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 30574 | 0.71 | 0.301727 |
Target: 5'- gCGgCGACGgUCGGCGAaCCGgAGCGg -3' miRNA: 3'- gGCaGCUGCgAGCUGCUcGGCgUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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