miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 5' -58.9 NC_004084.1 + 30574 0.71 0.301727
Target:  5'- gCGgCGACGgUCGGCGAaCCGgAGCGg -3'
miRNA:   3'- gGCaGCUGCgAGCUGCUcGGCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 29734 0.71 0.301727
Target:  5'- gCCGUCcGCccaguGCUCGACGuugagcucGCUGCGGCGg -3'
miRNA:   3'- -GGCAGcUG-----CGAGCUGCu-------CGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 39858 0.71 0.29463
Target:  5'- gCCG-CGGCGCcgUCGAgcacgcUGAGCUGCAGUGc -3'
miRNA:   3'- -GGCaGCUGCG--AGCU------GCUCGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 30333 0.71 0.301727
Target:  5'- aCCGUUGACcgUCGGCGAggugGCCGaCGGCGu -3'
miRNA:   3'- -GGCAGCUGcgAGCUGCU----CGGC-GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 57408 0.71 0.308955
Target:  5'- gCGUCGACGUcgcCGGCGAGCuCGaGGUGg -3'
miRNA:   3'- gGCAGCUGCGa--GCUGCUCG-GCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 42327 0.7 0.347065
Target:  5'- aCCGUCggGACGagaUCGACGAG--GCGGCGg -3'
miRNA:   3'- -GGCAG--CUGCg--AGCUGCUCggCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 18562 0.7 0.355079
Target:  5'- -aG-CG-UGCUCGACGGcGCCGCGGCc -3'
miRNA:   3'- ggCaGCuGCGAGCUGCU-CGGCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 31680 0.7 0.363223
Target:  5'- gCCGUCGGgaaGUUCGcugugggccgaGCGGGCCuCAGCGg -3'
miRNA:   3'- -GGCAGCUg--CGAGC-----------UGCUCGGcGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 7156 0.7 0.355079
Target:  5'- gCCGggGugGUUCGGgGucGGUCGCAGCGa -3'
miRNA:   3'- -GGCagCugCGAGCUgC--UCGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 1978 0.7 0.379896
Target:  5'- gCCGUCGAgaucguCGUUcCGACGGuGCCGCuGUGc -3'
miRNA:   3'- -GGCAGCU------GCGA-GCUGCU-CGGCGuCGC- -5'
16461 5' -58.9 NC_004084.1 + 26194 0.7 0.363223
Target:  5'- aCCGUCGGCGUcgUCGAgGAGCaucucgaGGCGc -3'
miRNA:   3'- -GGCAGCUGCG--AGCUgCUCGgcg----UCGC- -5'
16461 5' -58.9 NC_004084.1 + 39618 0.7 0.371496
Target:  5'- gCCGgCGACGUccUCGACGAGUCGaucguacGCGa -3'
miRNA:   3'- -GGCaGCUGCG--AGCUGCUCGGCgu-----CGC- -5'
16461 5' -58.9 NC_004084.1 + 47571 0.7 0.379896
Target:  5'- gCCGUUcgagGACGUUCG-CGAGC-GCGGUGg -3'
miRNA:   3'- -GGCAG----CUGCGAGCuGCUCGgCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 27251 0.7 0.371496
Target:  5'- aCCGgaacCG-CGCUCGACGAGaucuCGCGGUc -3'
miRNA:   3'- -GGCa---GCuGCGAGCUGCUCg---GCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 52928 0.7 0.371496
Target:  5'- cUCGUCGACug-CGACGAucugGCCGuCGGCGu -3'
miRNA:   3'- -GGCAGCUGcgaGCUGCU----CGGC-GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 4272 0.7 0.371496
Target:  5'- cCCuUCGACGCgaaCGGCGucaggugcuggaAGCCGaCGGCGa -3'
miRNA:   3'- -GGcAGCUGCGa--GCUGC------------UCGGC-GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 57781 0.69 0.414742
Target:  5'- gCCGUCGAggaGCUccaCGACGAGaUCGcCAGCu -3'
miRNA:   3'- -GGCAGCUg--CGA---GCUGCUC-GGC-GUCGc -5'
16461 5' -58.9 NC_004084.1 + 51232 0.69 0.423755
Target:  5'- gCGUCGAgcaGCUCGACGuccGGaUCGCuGCGa -3'
miRNA:   3'- gGCAGCUg--CGAGCUGC---UC-GGCGuCGC- -5'
16461 5' -58.9 NC_004084.1 + 51448 0.69 0.432885
Target:  5'- aCGUUGGCGa-----GGGCCGCGGCGg -3'
miRNA:   3'- gGCAGCUGCgagcugCUCGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 21707 0.69 0.388422
Target:  5'- aCGUCGGCGaccgUCGACGAGauCCGCGaCGu -3'
miRNA:   3'- gGCAGCUGCg---AGCUGCUC--GGCGUcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.