miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 5' -58.9 NC_004084.1 + 43399 1.09 0.000615
Target:  5'- gCCGUCGACGCUCGACGAGCCGCAGCGc -3'
miRNA:   3'- -GGCAGCUGCGAGCUGCUCGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 58126 0.77 0.123809
Target:  5'- cUCGUCGGCGgUCGucguCGAGCCGCcGUGa -3'
miRNA:   3'- -GGCAGCUGCgAGCu---GCUCGGCGuCGC- -5'
16461 5' -58.9 NC_004084.1 + 55060 0.75 0.169893
Target:  5'- aCCGUCGACGCacgUCGACGA-CCaauCGGCGg -3'
miRNA:   3'- -GGCAGCUGCG---AGCUGCUcGGc--GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 31111 0.75 0.18839
Target:  5'- aCgGUCGAauaucaGCUCGuCGAGCCGC-GCGc -3'
miRNA:   3'- -GgCAGCUg-----CGAGCuGCUCGGCGuCGC- -5'
16461 5' -58.9 NC_004084.1 + 20056 0.74 0.193284
Target:  5'- -aGUCGAUGCUgucgauacCGACGAcGCCGgAGCGa -3'
miRNA:   3'- ggCAGCUGCGA--------GCUGCU-CGGCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 2288 0.74 0.198288
Target:  5'- -gGUCGACGC-CGACGAcaCUGCGGCGc -3'
miRNA:   3'- ggCAGCUGCGaGCUGCUc-GGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 10530 0.74 0.208637
Target:  5'- aCCGUCGACGUU-GcCGAGCCaGCGGaCGa -3'
miRNA:   3'- -GGCAGCUGCGAgCuGCUCGG-CGUC-GC- -5'
16461 5' -58.9 NC_004084.1 + 10227 0.74 0.219448
Target:  5'- cCCGUCGcCGCUUGAggucgccuggUGAGUCGCGGuCGg -3'
miRNA:   3'- -GGCAGCuGCGAGCU----------GCUCGGCGUC-GC- -5'
16461 5' -58.9 NC_004084.1 + 9913 0.73 0.248575
Target:  5'- aCGUCcaagacaagaGCGcCUCGACGAGCCuCAGCGa -3'
miRNA:   3'- gGCAGc---------UGC-GAGCUGCUCGGcGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 17047 0.73 0.254772
Target:  5'- cCCGUCGAUGCggUGACuGAcGUCGCAaGCGg -3'
miRNA:   3'- -GGCAGCUGCGa-GCUG-CU-CGGCGU-CGC- -5'
16461 5' -58.9 NC_004084.1 + 57645 0.72 0.274121
Target:  5'- gCGUCG-C-CUCGACGAGCCGauCGGCc -3'
miRNA:   3'- gGCAGCuGcGAGCUGCUCGGC--GUCGc -5'
16461 5' -58.9 NC_004084.1 + 19089 0.72 0.280827
Target:  5'- aCGUCGACG-UCGAUcAGCacCGCGGCGg -3'
miRNA:   3'- gGCAGCUGCgAGCUGcUCG--GCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 18302 0.72 0.280827
Target:  5'- aCCGUCGGC-CUCGuaggacuCGaAGCCGCuGGCGu -3'
miRNA:   3'- -GGCAGCUGcGAGCu------GC-UCGGCG-UCGC- -5'
16461 5' -58.9 NC_004084.1 + 39858 0.71 0.29463
Target:  5'- gCCG-CGGCGCcgUCGAgcacgcUGAGCUGCAGUGc -3'
miRNA:   3'- -GGCaGCUGCG--AGCU------GCUCGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 30574 0.71 0.301727
Target:  5'- gCGgCGACGgUCGGCGAaCCGgAGCGg -3'
miRNA:   3'- gGCaGCUGCgAGCUGCUcGGCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 30333 0.71 0.301727
Target:  5'- aCCGUUGACcgUCGGCGAggugGCCGaCGGCGu -3'
miRNA:   3'- -GGCAGCUGcgAGCUGCU----CGGC-GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 29734 0.71 0.301727
Target:  5'- gCCGUCcGCccaguGCUCGACGuugagcucGCUGCGGCGg -3'
miRNA:   3'- -GGCAGcUG-----CGAGCUGCu-------CGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 9406 0.71 0.308955
Target:  5'- aCGUCGACGCgcuugccgaUGACGAGCaCGC-GCu -3'
miRNA:   3'- gGCAGCUGCGa--------GCUGCUCG-GCGuCGc -5'
16461 5' -58.9 NC_004084.1 + 42201 0.71 0.308955
Target:  5'- uCCGUCGACGaaCUCGcguucaACGAGUCGaAGCGc -3'
miRNA:   3'- -GGCAGCUGC--GAGC------UGCUCGGCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 36822 0.71 0.308955
Target:  5'- gCGUCGACGaacgccgaUCGaACGAGCCGCGa-- -3'
miRNA:   3'- gGCAGCUGCg-------AGC-UGCUCGGCGUcgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.