miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 5' -58.9 NC_004084.1 + 9406 0.71 0.308955
Target:  5'- aCGUCGACGCgcuugccgaUGACGAGCaCGC-GCu -3'
miRNA:   3'- gGCAGCUGCGa--------GCUGCUCG-GCGuCGc -5'
16461 5' -58.9 NC_004084.1 + 56114 0.71 0.316314
Target:  5'- cUCGUCGACG-UCG-UGcGCCGCAGUGu -3'
miRNA:   3'- -GGCAGCUGCgAGCuGCuCGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 12214 0.71 0.32305
Target:  5'- aUCGUCGACGCaucCGACGAcgaucucGCCGCcuaccAGCu -3'
miRNA:   3'- -GGCAGCUGCGa--GCUGCU-------CGGCG-----UCGc -5'
16461 5' -58.9 NC_004084.1 + 50262 0.71 0.331427
Target:  5'- gCCGUUGGCGgcgaggucCUCGACGucuGCCGaccaGGCGu -3'
miRNA:   3'- -GGCAGCUGC--------GAGCUGCu--CGGCg---UCGC- -5'
16461 5' -58.9 NC_004084.1 + 41833 0.71 0.331427
Target:  5'- -aGUCGcCGCUcCGACGAGUaggaaaGCGGCa -3'
miRNA:   3'- ggCAGCuGCGA-GCUGCUCGg-----CGUCGc -5'
16461 5' -58.9 NC_004084.1 + 42327 0.7 0.347065
Target:  5'- aCCGUCggGACGagaUCGACGAG--GCGGCGg -3'
miRNA:   3'- -GGCAG--CUGCg--AGCUGCUCggCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 7156 0.7 0.355079
Target:  5'- gCCGggGugGUUCGGgGucGGUCGCAGCGa -3'
miRNA:   3'- -GGCagCugCGAGCUgC--UCGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 18562 0.7 0.355079
Target:  5'- -aG-CG-UGCUCGACGGcGCCGCGGCc -3'
miRNA:   3'- ggCaGCuGCGAGCUGCU-CGGCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 26194 0.7 0.363223
Target:  5'- aCCGUCGGCGUcgUCGAgGAGCaucucgaGGCGc -3'
miRNA:   3'- -GGCAGCUGCG--AGCUgCUCGgcg----UCGC- -5'
16461 5' -58.9 NC_004084.1 + 31680 0.7 0.363223
Target:  5'- gCCGUCGGgaaGUUCGcugugggccgaGCGGGCCuCAGCGg -3'
miRNA:   3'- -GGCAGCUg--CGAGC-----------UGCUCGGcGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 27251 0.7 0.371496
Target:  5'- aCCGgaacCG-CGCUCGACGAGaucuCGCGGUc -3'
miRNA:   3'- -GGCa---GCuGCGAGCUGCUCg---GCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 39618 0.7 0.371496
Target:  5'- gCCGgCGACGUccUCGACGAGUCGaucguacGCGa -3'
miRNA:   3'- -GGCaGCUGCG--AGCUGCUCGGCgu-----CGC- -5'
16461 5' -58.9 NC_004084.1 + 52928 0.7 0.371496
Target:  5'- cUCGUCGACug-CGACGAucugGCCGuCGGCGu -3'
miRNA:   3'- -GGCAGCUGcgaGCUGCU----CGGC-GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 4272 0.7 0.371496
Target:  5'- cCCuUCGACGCgaaCGGCGucaggugcuggaAGCCGaCGGCGa -3'
miRNA:   3'- -GGcAGCUGCGa--GCUGC------------UCGGC-GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 1978 0.7 0.379896
Target:  5'- gCCGUCGAgaucguCGUUcCGACGGuGCCGCuGUGc -3'
miRNA:   3'- -GGCAGCU------GCGA-GCUGCU-CGGCGuCGC- -5'
16461 5' -58.9 NC_004084.1 + 47571 0.7 0.379896
Target:  5'- gCCGUUcgagGACGUUCG-CGAGC-GCGGUGg -3'
miRNA:   3'- -GGCAG----CUGCGAGCuGCUCGgCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 53726 0.69 0.388422
Target:  5'- cUCGUCGGCucggucCUCGACGAGCUGCu--- -3'
miRNA:   3'- -GGCAGCUGc-----GAGCUGCUCGGCGucgc -5'
16461 5' -58.9 NC_004084.1 + 36610 0.69 0.388422
Target:  5'- aCCGUCGACGCUgaCGuuGAGgUGCAuCGg -3'
miRNA:   3'- -GGCAGCUGCGA--GCugCUCgGCGUcGC- -5'
16461 5' -58.9 NC_004084.1 + 21610 0.69 0.388422
Target:  5'- uUCGUCGACGCUCGucgagaACGAaGUCGagGGUGa -3'
miRNA:   3'- -GGCAGCUGCGAGC------UGCU-CGGCg-UCGC- -5'
16461 5' -58.9 NC_004084.1 + 21707 0.69 0.388422
Target:  5'- aCGUCGGCGaccgUCGACGAGauCCGCGaCGu -3'
miRNA:   3'- gGCAGCUGCg---AGCUGCUC--GGCGUcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.