Results 41 - 60 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16461 | 5' | -58.9 | NC_004084.1 | + | 42006 | 0.69 | 0.388422 |
Target: 5'- gCCGUCuuUGCUCGAguGGCCGUcGCGa -3' miRNA: 3'- -GGCAGcuGCGAGCUgcUCGGCGuCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 49323 | 0.69 | 0.397073 |
Target: 5'- cUCGUCGAcauCGCccggUCGGCGuaCCGCGGCGa -3' miRNA: 3'- -GGCAGCU---GCG----AGCUGCucGGCGUCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 12145 | 0.69 | 0.403202 |
Target: 5'- uCCGUCGACGaagCGAUGgaugucgcacacgaGGUCGCAGgGu -3' miRNA: 3'- -GGCAGCUGCga-GCUGC--------------UCGGCGUCgC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 28786 | 0.69 | 0.405847 |
Target: 5'- gUCGUCGACGUcCG--GAGCCGaCAGCc -3' miRNA: 3'- -GGCAGCUGCGaGCugCUCGGC-GUCGc -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 57781 | 0.69 | 0.414742 |
Target: 5'- gCCGUCGAggaGCUccaCGACGAGaUCGcCAGCu -3' miRNA: 3'- -GGCAGCUg--CGA---GCUGCUC-GGC-GUCGc -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 51232 | 0.69 | 0.423755 |
Target: 5'- gCGUCGAgcaGCUCGACGuccGGaUCGCuGCGa -3' miRNA: 3'- gGCAGCUg--CGAGCUGC---UC-GGCGuCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 51448 | 0.69 | 0.432885 |
Target: 5'- aCGUUGGCGa-----GGGCCGCGGCGg -3' miRNA: 3'- gGCAGCUGCgagcugCUCGGCGUCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 41081 | 0.68 | 0.442128 |
Target: 5'- aCGUCGACGagaCGauGCGGGCCGUcgccGCGg -3' miRNA: 3'- gGCAGCUGCga-GC--UGCUCGGCGu---CGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 48804 | 0.68 | 0.444923 |
Target: 5'- gCGUUGAuCGCUCGAagacgcgcacguaCGAGCCGaaugaucgcuuucuuCGGCGa -3' miRNA: 3'- gGCAGCU-GCGAGCU-------------GCUCGGC---------------GUCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 51855 | 0.68 | 0.451482 |
Target: 5'- gCG-CGugGCUCGACGAGUCGaacuacCGg -3' miRNA: 3'- gGCaGCugCGAGCUGCUCGGCguc---GC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 53254 | 0.68 | 0.451482 |
Target: 5'- gUCGUCGACGg-CGACGAgaucggGCCG-GGCGa -3' miRNA: 3'- -GGCAGCUGCgaGCUGCU------CGGCgUCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 45676 | 0.68 | 0.451482 |
Target: 5'- aCgGUCGGCG-UCGACGAGaUCGUGcGCGg -3' miRNA: 3'- -GgCAGCUGCgAGCUGCUC-GGCGU-CGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 37568 | 0.68 | 0.459992 |
Target: 5'- gCgGUCGACGUgccacccUCGGCGAGCgaguucugGUAGCGu -3' miRNA: 3'- -GgCAGCUGCG-------AGCUGCUCGg-------CGUCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 11654 | 0.68 | 0.460943 |
Target: 5'- aCGUCGACGUcggUCGGCGAcGaCUaCGGCGa -3' miRNA: 3'- gGCAGCUGCG---AGCUGCU-C-GGcGUCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 39343 | 0.68 | 0.460943 |
Target: 5'- aCGUCGACGUa-GACG-GCCGC-GCc -3' miRNA: 3'- gGCAGCUGCGagCUGCuCGGCGuCGc -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 7191 | 0.68 | 0.469547 |
Target: 5'- aCGUCGAgcUGCUCGACGcaccacgcccaguAGCCcgcgcCAGCGc -3' miRNA: 3'- gGCAGCU--GCGAGCUGC-------------UCGGc----GUCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 27047 | 0.68 | 0.470508 |
Target: 5'- cCCGUCGA-GUUCGACcAGUC-CAGCa -3' miRNA: 3'- -GGCAGCUgCGAGCUGcUCGGcGUCGc -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 20226 | 0.68 | 0.480173 |
Target: 5'- aCGUCGACGUcauUCGAgaUGAcGCCG-AGCGu -3' miRNA: 3'- gGCAGCUGCG---AGCU--GCU-CGGCgUCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 46703 | 0.68 | 0.480173 |
Target: 5'- gCCGgCGACGUcuaccgCGACGAGUgGUcgGGCGa -3' miRNA: 3'- -GGCaGCUGCGa-----GCUGCUCGgCG--UCGC- -5' |
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16461 | 5' | -58.9 | NC_004084.1 | + | 23367 | 0.68 | 0.480173 |
Target: 5'- aCGUCGACGUUCGGauccGUCGCgAGCc -3' miRNA: 3'- gGCAGCUGCGAGCUgcu-CGGCG-UCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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