miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 5' -58.9 NC_004084.1 + 49848 0.66 0.570883
Target:  5'- cUCGUCGACGUcgCGAgCGAGaUC-CGGCGa -3'
miRNA:   3'- -GGCAGCUGCGa-GCU-GCUC-GGcGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 5273 0.66 0.560538
Target:  5'- cUCGUCGA----CGACGucCCGCAGCGg -3'
miRNA:   3'- -GGCAGCUgcgaGCUGCucGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 26295 0.66 0.560538
Target:  5'- -aGUCGACcuccugguGCUCGACGAcgaGCUGCucgAGCu -3'
miRNA:   3'- ggCAGCUG--------CGAGCUGCU---CGGCG---UCGc -5'
16461 5' -58.9 NC_004084.1 + 27326 0.66 0.560538
Target:  5'- aCCGUUcACGUUCGA-GGGaCGCGGUGg -3'
miRNA:   3'- -GGCAGcUGCGAGCUgCUCgGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 19146 0.66 0.559507
Target:  5'- uCCG-CGACGCgaUCGACGAccaccaucuucccGCCGCccuuGCc -3'
miRNA:   3'- -GGCaGCUGCG--AGCUGCU-------------CGGCGu---CGc -5'
16461 5' -58.9 NC_004084.1 + 46207 0.66 0.559507
Target:  5'- gUCGUCgGAUGCgUCGACGAucaucaucaggucGCCGCuGgGg -3'
miRNA:   3'- -GGCAG-CUGCG-AGCUGCU-------------CGGCGuCgC- -5'
16461 5' -58.9 NC_004084.1 + 7806 0.67 0.550246
Target:  5'- aCCGUCGACGacCUCGACGcuGGagGCAcGCu -3'
miRNA:   3'- -GGCAGCUGC--GAGCUGC--UCggCGU-CGc -5'
16461 5' -58.9 NC_004084.1 + 56609 0.67 0.550246
Target:  5'- gUCGUCGcCGgUCGGCGAGUucgccggauCGUGGCu -3'
miRNA:   3'- -GGCAGCuGCgAGCUGCUCG---------GCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 55346 0.67 0.550246
Target:  5'- aCGUCGACGagcggcccgUCGACGAGUUccucgaggGUGGCGa -3'
miRNA:   3'- gGCAGCUGCg--------AGCUGCUCGG--------CGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 49072 0.67 0.550246
Target:  5'- aCCGUCGACGUgCGACG-GUCGgGagaggucucGCGu -3'
miRNA:   3'- -GGCAGCUGCGaGCUGCuCGGCgU---------CGC- -5'
16461 5' -58.9 NC_004084.1 + 42726 0.67 0.550246
Target:  5'- gCGUCGGCGagUUGAUcGGCUGCgAGCGc -3'
miRNA:   3'- gGCAGCUGCg-AGCUGcUCGGCG-UCGC- -5'
16461 5' -58.9 NC_004084.1 + 5476 0.67 0.54922
Target:  5'- aCGaCGACGC-CGACGGccagaucGUCGCAGuCGa -3'
miRNA:   3'- gGCaGCUGCGaGCUGCU-------CGGCGUC-GC- -5'
16461 5' -58.9 NC_004084.1 + 8778 0.67 0.540012
Target:  5'- aCGcCGACuccauCUCGACgGAGCC-CGGCGa -3'
miRNA:   3'- gGCaGCUGc----GAGCUG-CUCGGcGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 17213 0.67 0.529844
Target:  5'- -aGUCGACGCUCGGucaaacaccgcuCGGuGaaGCAGCa -3'
miRNA:   3'- ggCAGCUGCGAGCU------------GCU-CggCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 44327 0.67 0.529844
Target:  5'- gCCGccaCGACGacaUCGACGucuacgucGGUCGCGGUGa -3'
miRNA:   3'- -GGCa--GCUGCg--AGCUGC--------UCGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 41908 0.67 0.529844
Target:  5'- aCCG-CGGCGCgCGAuCGccuGCUGUGGCGa -3'
miRNA:   3'- -GGCaGCUGCGaGCU-GCu--CGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 8399 0.67 0.528831
Target:  5'- uUCGUCGGauguUGCUCGuguucaGCGGGCCGUuguacgcaucaccAGCGu -3'
miRNA:   3'- -GGCAGCU----GCGAGC------UGCUCGGCG-------------UCGC- -5'
16461 5' -58.9 NC_004084.1 + 41311 0.67 0.520753
Target:  5'- aCGUCGAgGCUaucgauggagggcagGACGAuGCCugagGCAGCGa -3'
miRNA:   3'- gGCAGCUgCGAg--------------CUGCU-CGG----CGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 1547 0.67 0.519746
Target:  5'- aCCGaggCGACgGC-CGuCGAGCCGgAGCc -3'
miRNA:   3'- -GGCa--GCUG-CGaGCuGCUCGGCgUCGc -5'
16461 5' -58.9 NC_004084.1 + 28171 0.67 0.519746
Target:  5'- uCCGuccUCGGCcuGUUCGACGucGCCGCGGaCa -3'
miRNA:   3'- -GGC---AGCUG--CGAGCUGCu-CGGCGUC-Gc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.