miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 5' -58.9 NC_004084.1 + 56237 0.67 0.519746
Target:  5'- gCCGUccCGGCGCUCGAgCGA-CUGCAuCGa -3'
miRNA:   3'- -GGCA--GCUGCGAGCU-GCUcGGCGUcGC- -5'
16461 5' -58.9 NC_004084.1 + 1547 0.67 0.519746
Target:  5'- aCCGaggCGACgGC-CGuCGAGCCGgAGCc -3'
miRNA:   3'- -GGCa--GCUG-CGaGCuGCUCGGCgUCGc -5'
16461 5' -58.9 NC_004084.1 + 28171 0.67 0.519746
Target:  5'- uCCGuccUCGGCcuGUUCGACGucGCCGCGGaCa -3'
miRNA:   3'- -GGC---AGCUG--CGAGCUGCu-CGGCGUC-Gc -5'
16461 5' -58.9 NC_004084.1 + 638 0.67 0.519746
Target:  5'- cUCGUCGugGagcucCUCGACGGcGUCGUGGUa -3'
miRNA:   3'- -GGCAGCugC-----GAGCUGCU-CGGCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 34788 0.67 0.518741
Target:  5'- aCCGcaggaUGACGcCUCGACGGGCCugacgcuucgagcGCAGUu -3'
miRNA:   3'- -GGCa----GCUGC-GAGCUGCUCGG-------------CGUCGc -5'
16461 5' -58.9 NC_004084.1 + 22450 0.67 0.509725
Target:  5'- gCCGUCuucgggGGCGCUCG-CGAcgGCUGCgugguGGCGg -3'
miRNA:   3'- -GGCAG------CUGCGAGCuGCU--CGGCG-----UCGC- -5'
16461 5' -58.9 NC_004084.1 + 28948 0.67 0.508728
Target:  5'- gCGUCGACaGCgUCGAUGGgcaucgcgcccacGCCGCGuucGCGg -3'
miRNA:   3'- gGCAGCUG-CG-AGCUGCU-------------CGGCGU---CGC- -5'
16461 5' -58.9 NC_004084.1 + 42662 0.68 0.489934
Target:  5'- gCCGUCGAgaGCcugaauacUCGGCGcgaGGCUGcCAGCGa -3'
miRNA:   3'- -GGCAGCUg-CG--------AGCUGC---UCGGC-GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 2531 0.68 0.489934
Target:  5'- aUCGUCGuCGCaCGGguGGCCGCuGCGg -3'
miRNA:   3'- -GGCAGCuGCGaGCUgcUCGGCGuCGC- -5'
16461 5' -58.9 NC_004084.1 + 45 0.68 0.489934
Target:  5'- gCCGUCGGC---CGAuuucUGAGCCGgGGCGg -3'
miRNA:   3'- -GGCAGCUGcgaGCU----GCUCGGCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 30929 0.68 0.489934
Target:  5'- aCGUCGAuCGCUCGuCGAcGUCG-AGCu -3'
miRNA:   3'- gGCAGCU-GCGAGCuGCU-CGGCgUCGc -5'
16461 5' -58.9 NC_004084.1 + 20226 0.68 0.480173
Target:  5'- aCGUCGACGUcauUCGAgaUGAcGCCG-AGCGu -3'
miRNA:   3'- gGCAGCUGCG---AGCU--GCU-CGGCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 46703 0.68 0.480173
Target:  5'- gCCGgCGACGUcuaccgCGACGAGUgGUcgGGCGa -3'
miRNA:   3'- -GGCaGCUGCGa-----GCUGCUCGgCG--UCGC- -5'
16461 5' -58.9 NC_004084.1 + 23367 0.68 0.480173
Target:  5'- aCGUCGACGUUCGGauccGUCGCgAGCc -3'
miRNA:   3'- gGCAGCUGCGAGCUgcu-CGGCG-UCGc -5'
16461 5' -58.9 NC_004084.1 + 27047 0.68 0.470508
Target:  5'- cCCGUCGA-GUUCGACcAGUC-CAGCa -3'
miRNA:   3'- -GGCAGCUgCGAGCUGcUCGGcGUCGc -5'
16461 5' -58.9 NC_004084.1 + 7191 0.68 0.469547
Target:  5'- aCGUCGAgcUGCUCGACGcaccacgcccaguAGCCcgcgcCAGCGc -3'
miRNA:   3'- gGCAGCU--GCGAGCUGC-------------UCGGc----GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 39343 0.68 0.460943
Target:  5'- aCGUCGACGUa-GACG-GCCGC-GCc -3'
miRNA:   3'- gGCAGCUGCGagCUGCuCGGCGuCGc -5'
16461 5' -58.9 NC_004084.1 + 11654 0.68 0.460943
Target:  5'- aCGUCGACGUcggUCGGCGAcGaCUaCGGCGa -3'
miRNA:   3'- gGCAGCUGCG---AGCUGCU-C-GGcGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 37568 0.68 0.459992
Target:  5'- gCgGUCGACGUgccacccUCGGCGAGCgaguucugGUAGCGu -3'
miRNA:   3'- -GgCAGCUGCG-------AGCUGCUCGg-------CGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 53254 0.68 0.451482
Target:  5'- gUCGUCGACGg-CGACGAgaucggGCCG-GGCGa -3'
miRNA:   3'- -GGCAGCUGCgaGCUGCU------CGGCgUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.