miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 5' -58.9 NC_004084.1 + 45 0.68 0.489934
Target:  5'- gCCGUCGGC---CGAuuucUGAGCCGgGGCGg -3'
miRNA:   3'- -GGCAGCUGcgaGCU----GCUCGGCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 638 0.67 0.519746
Target:  5'- cUCGUCGugGagcucCUCGACGGcGUCGUGGUa -3'
miRNA:   3'- -GGCAGCugC-----GAGCUGCU-CGGCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 686 0.66 0.581274
Target:  5'- uUCGUCGACGUccUCGAgCGGuGCaCGCAcuguGCGu -3'
miRNA:   3'- -GGCAGCUGCG--AGCU-GCU-CG-GCGU----CGC- -5'
16461 5' -58.9 NC_004084.1 + 904 0.66 0.612646
Target:  5'- gCUGUCGGCGUcgUCGGaguucGCUGCGGCc -3'
miRNA:   3'- -GGCAGCUGCG--AGCUgcu--CGGCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 1179 0.66 0.612646
Target:  5'- aUCGcCGACGCggUCGugGAcguaGUCGCguaAGCGg -3'
miRNA:   3'- -GGCaGCUGCG--AGCugCU----CGGCG---UCGC- -5'
16461 5' -58.9 NC_004084.1 + 1547 0.67 0.519746
Target:  5'- aCCGaggCGACgGC-CGuCGAGCCGgAGCc -3'
miRNA:   3'- -GGCa--GCUG-CGaGCuGCUCGGCgUCGc -5'
16461 5' -58.9 NC_004084.1 + 1978 0.7 0.379896
Target:  5'- gCCGUCGAgaucguCGUUcCGACGGuGCCGCuGUGc -3'
miRNA:   3'- -GGCAGCU------GCGA-GCUGCU-CGGCGuCGC- -5'
16461 5' -58.9 NC_004084.1 + 2288 0.74 0.198288
Target:  5'- -gGUCGACGC-CGACGAcaCUGCGGCGc -3'
miRNA:   3'- ggCAGCUGCGaGCUGCUc-GGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 2531 0.68 0.489934
Target:  5'- aUCGUCGuCGCaCGGguGGCCGCuGCGg -3'
miRNA:   3'- -GGCAGCuGCGaGCUgcUCGGCGuCGC- -5'
16461 5' -58.9 NC_004084.1 + 3833 0.66 0.591703
Target:  5'- uUCGUCGACGC-CGACGAcgGCUcCAcCGg -3'
miRNA:   3'- -GGCAGCUGCGaGCUGCU--CGGcGUcGC- -5'
16461 5' -58.9 NC_004084.1 + 4272 0.7 0.371496
Target:  5'- cCCuUCGACGCgaaCGGCGucaggugcuggaAGCCGaCGGCGa -3'
miRNA:   3'- -GGcAGCUGCGa--GCUGC------------UCGGC-GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 5273 0.66 0.560538
Target:  5'- cUCGUCGA----CGACGucCCGCAGCGg -3'
miRNA:   3'- -GGCAGCUgcgaGCUGCucGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 5476 0.67 0.54922
Target:  5'- aCGaCGACGC-CGACGGccagaucGUCGCAGuCGa -3'
miRNA:   3'- gGCaGCUGCGaGCUGCU-------CGGCGUC-GC- -5'
16461 5' -58.9 NC_004084.1 + 7156 0.7 0.355079
Target:  5'- gCCGggGugGUUCGGgGucGGUCGCAGCGa -3'
miRNA:   3'- -GGCagCugCGAGCUgC--UCGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 7191 0.68 0.469547
Target:  5'- aCGUCGAgcUGCUCGACGcaccacgcccaguAGCCcgcgcCAGCGc -3'
miRNA:   3'- gGCAGCU--GCGAGCUGC-------------UCGGc----GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 7388 0.66 0.570883
Target:  5'- -aG-CGAcCGCaUCGACGAGCUGagcaaGGCGa -3'
miRNA:   3'- ggCaGCU-GCG-AGCUGCUCGGCg----UCGC- -5'
16461 5' -58.9 NC_004084.1 + 7806 0.67 0.550246
Target:  5'- aCCGUCGACGacCUCGACGcuGGagGCAcGCu -3'
miRNA:   3'- -GGCAGCUGC--GAGCUGC--UCggCGU-CGc -5'
16461 5' -58.9 NC_004084.1 + 8399 0.67 0.528831
Target:  5'- uUCGUCGGauguUGCUCGuguucaGCGGGCCGUuguacgcaucaccAGCGu -3'
miRNA:   3'- -GGCAGCU----GCGAGC------UGCUCGGCG-------------UCGC- -5'
16461 5' -58.9 NC_004084.1 + 8778 0.67 0.540012
Target:  5'- aCGcCGACuccauCUCGACgGAGCC-CGGCGa -3'
miRNA:   3'- gGCaGCUGc----GAGCUG-CUCGGcGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 9406 0.71 0.308955
Target:  5'- aCGUCGACGCgcuugccgaUGACGAGCaCGC-GCu -3'
miRNA:   3'- gGCAGCUGCGa--------GCUGCUCG-GCGuCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.