miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 5' -58.9 NC_004084.1 + 9913 0.73 0.248575
Target:  5'- aCGUCcaagacaagaGCGcCUCGACGAGCCuCAGCGa -3'
miRNA:   3'- gGCAGc---------UGC-GAGCUGCUCGGcGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 10227 0.74 0.219448
Target:  5'- cCCGUCGcCGCUUGAggucgccuggUGAGUCGCGGuCGg -3'
miRNA:   3'- -GGCAGCuGCGAGCU----------GCUCGGCGUC-GC- -5'
16461 5' -58.9 NC_004084.1 + 10530 0.74 0.208637
Target:  5'- aCCGUCGACGUU-GcCGAGCCaGCGGaCGa -3'
miRNA:   3'- -GGCAGCUGCGAgCuGCUCGG-CGUC-GC- -5'
16461 5' -58.9 NC_004084.1 + 11654 0.68 0.460943
Target:  5'- aCGUCGACGUcggUCGGCGAcGaCUaCGGCGa -3'
miRNA:   3'- gGCAGCUGCG---AGCUGCU-C-GGcGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 12145 0.69 0.403202
Target:  5'- uCCGUCGACGaagCGAUGgaugucgcacacgaGGUCGCAGgGu -3'
miRNA:   3'- -GGCAGCUGCga-GCUGC--------------UCGGCGUCgC- -5'
16461 5' -58.9 NC_004084.1 + 12214 0.71 0.32305
Target:  5'- aUCGUCGACGCaucCGACGAcgaucucGCCGCcuaccAGCu -3'
miRNA:   3'- -GGCAGCUGCGa--GCUGCU-------CGGCG-----UCGc -5'
16461 5' -58.9 NC_004084.1 + 12791 0.67 0.519746
Target:  5'- gCCGUCGACGaC-CGACaGGuuGuCAGCc -3'
miRNA:   3'- -GGCAGCUGC-GaGCUGcUCggC-GUCGc -5'
16461 5' -58.9 NC_004084.1 + 14093 0.66 0.570883
Target:  5'- aCGUCGAUG-UCGuCGuGGCgGCAGUGu -3'
miRNA:   3'- gGCAGCUGCgAGCuGC-UCGgCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 16855 0.66 0.600069
Target:  5'- cCCGUCGAUGaUCGcaagugggaucuCGAGC-GCGGCGu -3'
miRNA:   3'- -GGCAGCUGCgAGCu-----------GCUCGgCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 17047 0.73 0.254772
Target:  5'- cCCGUCGAUGCggUGACuGAcGUCGCAaGCGg -3'
miRNA:   3'- -GGCAGCUGCGa-GCUG-CU-CGGCGU-CGC- -5'
16461 5' -58.9 NC_004084.1 + 17213 0.67 0.529844
Target:  5'- -aGUCGACGCUCGGucaaacaccgcuCGGuGaaGCAGCa -3'
miRNA:   3'- ggCAGCUGCGAGCU------------GCU-CggCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 18302 0.72 0.280827
Target:  5'- aCCGUCGGC-CUCGuaggacuCGaAGCCGCuGGCGu -3'
miRNA:   3'- -GGCAGCUGcGAGCu------GC-UCGGCG-UCGC- -5'
16461 5' -58.9 NC_004084.1 + 18562 0.7 0.355079
Target:  5'- -aG-CG-UGCUCGACGGcGCCGCGGCc -3'
miRNA:   3'- ggCaGCuGCGAGCUGCU-CGGCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 19089 0.72 0.280827
Target:  5'- aCGUCGACG-UCGAUcAGCacCGCGGCGg -3'
miRNA:   3'- gGCAGCUGCgAGCUGcUCG--GCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 19146 0.66 0.559507
Target:  5'- uCCG-CGACGCgaUCGACGAccaccaucuucccGCCGCccuuGCc -3'
miRNA:   3'- -GGCaGCUGCG--AGCUGCU-------------CGGCGu---CGc -5'
16461 5' -58.9 NC_004084.1 + 20056 0.74 0.193284
Target:  5'- -aGUCGAUGCUgucgauacCGACGAcGCCGgAGCGa -3'
miRNA:   3'- ggCAGCUGCGA--------GCUGCU-CGGCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 20226 0.68 0.480173
Target:  5'- aCGUCGACGUcauUCGAgaUGAcGCCG-AGCGu -3'
miRNA:   3'- gGCAGCUGCG---AGCU--GCU-CGGCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 21610 0.69 0.388422
Target:  5'- uUCGUCGACGCUCGucgagaACGAaGUCGagGGUGa -3'
miRNA:   3'- -GGCAGCUGCGAGC------UGCU-CGGCg-UCGC- -5'
16461 5' -58.9 NC_004084.1 + 21707 0.69 0.388422
Target:  5'- aCGUCGGCGaccgUCGACGAGauCCGCGaCGu -3'
miRNA:   3'- gGCAGCUGCg---AGCUGCUC--GGCGUcGC- -5'
16461 5' -58.9 NC_004084.1 + 22450 0.67 0.509725
Target:  5'- gCCGUCuucgggGGCGCUCG-CGAcgGCUGCgugguGGCGg -3'
miRNA:   3'- -GGCAG------CUGCGAGCuGCU--CGGCG-----UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.