miRNA display CGI


Results 41 - 60 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 5' -58.9 NC_004084.1 + 23367 0.68 0.480173
Target:  5'- aCGUCGACGUUCGGauccGUCGCgAGCc -3'
miRNA:   3'- gGCAGCUGCGAGCUgcu-CGGCG-UCGc -5'
16461 5' -58.9 NC_004084.1 + 26194 0.7 0.363223
Target:  5'- aCCGUCGGCGUcgUCGAgGAGCaucucgaGGCGc -3'
miRNA:   3'- -GGCAGCUGCG--AGCUgCUCGgcg----UCGC- -5'
16461 5' -58.9 NC_004084.1 + 26295 0.66 0.560538
Target:  5'- -aGUCGACcuccugguGCUCGACGAcgaGCUGCucgAGCu -3'
miRNA:   3'- ggCAGCUG--------CGAGCUGCU---CGGCG---UCGc -5'
16461 5' -58.9 NC_004084.1 + 27047 0.68 0.470508
Target:  5'- cCCGUCGA-GUUCGACcAGUC-CAGCa -3'
miRNA:   3'- -GGCAGCUgCGAGCUGcUCGGcGUCGc -5'
16461 5' -58.9 NC_004084.1 + 27251 0.7 0.371496
Target:  5'- aCCGgaacCG-CGCUCGACGAGaucuCGCGGUc -3'
miRNA:   3'- -GGCa---GCuGCGAGCUGCUCg---GCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 27326 0.66 0.560538
Target:  5'- aCCGUUcACGUUCGA-GGGaCGCGGUGg -3'
miRNA:   3'- -GGCAGcUGCGAGCUgCUCgGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 28171 0.67 0.519746
Target:  5'- uCCGuccUCGGCcuGUUCGACGucGCCGCGGaCa -3'
miRNA:   3'- -GGC---AGCUG--CGAGCUGCu-CGGCGUC-Gc -5'
16461 5' -58.9 NC_004084.1 + 28786 0.69 0.405847
Target:  5'- gUCGUCGACGUcCG--GAGCCGaCAGCc -3'
miRNA:   3'- -GGCAGCUGCGaGCugCUCGGC-GUCGc -5'
16461 5' -58.9 NC_004084.1 + 28948 0.67 0.508728
Target:  5'- gCGUCGACaGCgUCGAUGGgcaucgcgcccacGCCGCGuucGCGg -3'
miRNA:   3'- gGCAGCUG-CG-AGCUGCU-------------CGGCGU---CGC- -5'
16461 5' -58.9 NC_004084.1 + 29429 0.67 0.519746
Target:  5'- gCCGUCGACG----GCGAGCuucaccgcgaaCGCGGCGu -3'
miRNA:   3'- -GGCAGCUGCgagcUGCUCG-----------GCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 29470 0.66 0.612646
Target:  5'- cUCGUagacGCGCUCGAgGGuGCgGCGGUGg -3'
miRNA:   3'- -GGCAgc--UGCGAGCUgCU-CGgCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 29734 0.71 0.301727
Target:  5'- gCCGUCcGCccaguGCUCGACGuugagcucGCUGCGGCGg -3'
miRNA:   3'- -GGCAGcUG-----CGAGCUGCu-------CGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 30333 0.71 0.301727
Target:  5'- aCCGUUGACcgUCGGCGAggugGCCGaCGGCGu -3'
miRNA:   3'- -GGCAGCUGcgAGCUGCU----CGGC-GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 30574 0.71 0.301727
Target:  5'- gCGgCGACGgUCGGCGAaCCGgAGCGg -3'
miRNA:   3'- gGCaGCUGCgAGCUGCUcGGCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 30929 0.68 0.489934
Target:  5'- aCGUCGAuCGCUCGuCGAcGUCG-AGCu -3'
miRNA:   3'- gGCAGCU-GCGAGCuGCU-CGGCgUCGc -5'
16461 5' -58.9 NC_004084.1 + 31111 0.75 0.18839
Target:  5'- aCgGUCGAauaucaGCUCGuCGAGCCGC-GCGc -3'
miRNA:   3'- -GgCAGCUg-----CGAGCuGCUCGGCGuCGC- -5'
16461 5' -58.9 NC_004084.1 + 31680 0.7 0.363223
Target:  5'- gCCGUCGGgaaGUUCGcugugggccgaGCGGGCCuCAGCGg -3'
miRNA:   3'- -GGCAGCUg--CGAGC-----------UGCUCGGcGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 34788 0.67 0.518741
Target:  5'- aCCGcaggaUGACGcCUCGACGGGCCugacgcuucgagcGCAGUu -3'
miRNA:   3'- -GGCa----GCUGC-GAGCUGCUCGG-------------CGUCGc -5'
16461 5' -58.9 NC_004084.1 + 36610 0.69 0.388422
Target:  5'- aCCGUCGACGCUgaCGuuGAGgUGCAuCGg -3'
miRNA:   3'- -GGCAGCUGCGA--GCugCUCgGCGUcGC- -5'
16461 5' -58.9 NC_004084.1 + 36822 0.71 0.308955
Target:  5'- gCGUCGACGaacgccgaUCGaACGAGCCGCGa-- -3'
miRNA:   3'- gGCAGCUGCg-------AGC-UGCUCGGCGUcgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.