miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 5' -58.9 NC_004084.1 + 58126 0.77 0.123809
Target:  5'- cUCGUCGGCGgUCGucguCGAGCCGCcGUGa -3'
miRNA:   3'- -GGCAGCUGCgAGCu---GCUCGGCGuCGC- -5'
16461 5' -58.9 NC_004084.1 + 57781 0.69 0.414742
Target:  5'- gCCGUCGAggaGCUccaCGACGAGaUCGcCAGCu -3'
miRNA:   3'- -GGCAGCUg--CGA---GCUGCUC-GGC-GUCGc -5'
16461 5' -58.9 NC_004084.1 + 57645 0.72 0.274121
Target:  5'- gCGUCG-C-CUCGACGAGCCGauCGGCc -3'
miRNA:   3'- gGCAGCuGcGAGCUGCUCGGC--GUCGc -5'
16461 5' -58.9 NC_004084.1 + 57408 0.71 0.308955
Target:  5'- gCGUCGACGUcgcCGGCGAGCuCGaGGUGg -3'
miRNA:   3'- gGCAGCUGCGa--GCUGCUCG-GCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 56609 0.67 0.550246
Target:  5'- gUCGUCGcCGgUCGGCGAGUucgccggauCGUGGCu -3'
miRNA:   3'- -GGCAGCuGCgAGCUGCUCG---------GCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 56478 0.66 0.570883
Target:  5'- uCCGU-GACGCUgCGAagGAGauGCGGCGu -3'
miRNA:   3'- -GGCAgCUGCGA-GCUg-CUCggCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 56237 0.67 0.519746
Target:  5'- gCCGUccCGGCGCUCGAgCGA-CUGCAuCGa -3'
miRNA:   3'- -GGCA--GCUGCGAGCU-GCUcGGCGUcGC- -5'
16461 5' -58.9 NC_004084.1 + 56114 0.71 0.316314
Target:  5'- cUCGUCGACG-UCG-UGcGCCGCAGUGu -3'
miRNA:   3'- -GGCAGCUGCgAGCuGCuCGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 55346 0.67 0.550246
Target:  5'- aCGUCGACGagcggcccgUCGACGAGUUccucgaggGUGGCGa -3'
miRNA:   3'- gGCAGCUGCg--------AGCUGCUCGG--------CGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 55252 0.66 0.570883
Target:  5'- gCCGUCGACGacgUCuACG-GUCgGCGGCGu -3'
miRNA:   3'- -GGCAGCUGCg--AGcUGCuCGG-CGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 55060 0.75 0.169893
Target:  5'- aCCGUCGACGCacgUCGACGA-CCaauCGGCGg -3'
miRNA:   3'- -GGCAGCUGCG---AGCUGCUcGGc--GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 53726 0.69 0.388422
Target:  5'- cUCGUCGGCucggucCUCGACGAGCUGCu--- -3'
miRNA:   3'- -GGCAGCUGc-----GAGCUGCUCGGCGucgc -5'
16461 5' -58.9 NC_004084.1 + 53254 0.68 0.451482
Target:  5'- gUCGUCGACGg-CGACGAgaucggGCCG-GGCGa -3'
miRNA:   3'- -GGCAGCUGCgaGCUGCU------CGGCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 52928 0.7 0.371496
Target:  5'- cUCGUCGACug-CGACGAucugGCCGuCGGCGu -3'
miRNA:   3'- -GGCAGCUGcgaGCUGCU----CGGC-GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 51983 0.66 0.591703
Target:  5'- aCCaGUgGGCGUUCGAacUGaAGCCGCGGg- -3'
miRNA:   3'- -GG-CAgCUGCGAGCU--GC-UCGGCGUCgc -5'
16461 5' -58.9 NC_004084.1 + 51855 0.68 0.451482
Target:  5'- gCG-CGugGCUCGACGAGUCGaacuacCGg -3'
miRNA:   3'- gGCaGCugCGAGCUGCUCGGCguc---GC- -5'
16461 5' -58.9 NC_004084.1 + 51448 0.69 0.432885
Target:  5'- aCGUUGGCGa-----GGGCCGCGGCGg -3'
miRNA:   3'- gGCAGCUGCgagcugCUCGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 51232 0.69 0.423755
Target:  5'- gCGUCGAgcaGCUCGACGuccGGaUCGCuGCGa -3'
miRNA:   3'- gGCAGCUg--CGAGCUGC---UC-GGCGuCGC- -5'
16461 5' -58.9 NC_004084.1 + 50955 0.66 0.606354
Target:  5'- gCCGUCGcCGCUCGAgucgccgucggacucCGAGgucucgccaCCGuCGGCa -3'
miRNA:   3'- -GGCAGCuGCGAGCU---------------GCUC---------GGC-GUCGc -5'
16461 5' -58.9 NC_004084.1 + 50262 0.71 0.331427
Target:  5'- gCCGUUGGCGgcgaggucCUCGACGucuGCCGaccaGGCGu -3'
miRNA:   3'- -GGCAGCUGC--------GAGCUGCu--CGGCg---UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.