miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 5' -58.9 NC_004084.1 + 49848 0.66 0.570883
Target:  5'- cUCGUCGACGUcgCGAgCGAGaUC-CGGCGa -3'
miRNA:   3'- -GGCAGCUGCGa-GCU-GCUC-GGcGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 49323 0.69 0.397073
Target:  5'- cUCGUCGAcauCGCccggUCGGCGuaCCGCGGCGa -3'
miRNA:   3'- -GGCAGCU---GCG----AGCUGCucGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 49072 0.67 0.550246
Target:  5'- aCCGUCGACGUgCGACG-GUCGgGagaggucucGCGu -3'
miRNA:   3'- -GGCAGCUGCGaGCUGCuCGGCgU---------CGC- -5'
16461 5' -58.9 NC_004084.1 + 48804 0.68 0.444923
Target:  5'- gCGUUGAuCGCUCGAagacgcgcacguaCGAGCCGaaugaucgcuuucuuCGGCGa -3'
miRNA:   3'- gGCAGCU-GCGAGCU-------------GCUCGGC---------------GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 48621 0.66 0.570883
Target:  5'- gCCGUgcauguggaGGCGCugUCGaACG-GCCGCAGCc -3'
miRNA:   3'- -GGCAg--------CUGCG--AGC-UGCuCGGCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 47571 0.7 0.379896
Target:  5'- gCCGUUcgagGACGUUCG-CGAGC-GCGGUGg -3'
miRNA:   3'- -GGCAG----CUGCGAGCuGCUCGgCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 47263 0.66 0.612646
Target:  5'- cUCGcCGGCGCcuacuacgaggUCGACGAcGUC-CAGCGg -3'
miRNA:   3'- -GGCaGCUGCG-----------AGCUGCU-CGGcGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 46703 0.68 0.480173
Target:  5'- gCCGgCGACGUcuaccgCGACGAGUgGUcgGGCGa -3'
miRNA:   3'- -GGCaGCUGCGa-----GCUGCUCGgCG--UCGC- -5'
16461 5' -58.9 NC_004084.1 + 46207 0.66 0.559507
Target:  5'- gUCGUCgGAUGCgUCGACGAucaucaucaggucGCCGCuGgGg -3'
miRNA:   3'- -GGCAG-CUGCG-AGCUGCU-------------CGGCGuCgC- -5'
16461 5' -58.9 NC_004084.1 + 45986 0.66 0.602163
Target:  5'- aCGUCGACGCgaucauggaCGGCGAGaaGaCGGUc -3'
miRNA:   3'- gGCAGCUGCGa--------GCUGCUCggC-GUCGc -5'
16461 5' -58.9 NC_004084.1 + 45676 0.68 0.451482
Target:  5'- aCgGUCGGCG-UCGACGAGaUCGUGcGCGg -3'
miRNA:   3'- -GgCAGCUGCgAGCUGCUC-GGCGU-CGC- -5'
16461 5' -58.9 NC_004084.1 + 44947 0.66 0.581274
Target:  5'- uUCGUCGACGagaaCGGCGuucGUCGCgAGUGg -3'
miRNA:   3'- -GGCAGCUGCga--GCUGCu--CGGCG-UCGC- -5'
16461 5' -58.9 NC_004084.1 + 44327 0.67 0.529844
Target:  5'- gCCGccaCGACGacaUCGACGucuacgucGGUCGCGGUGa -3'
miRNA:   3'- -GGCa--GCUGCg--AGCUGC--------UCGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 43399 1.09 0.000615
Target:  5'- gCCGUCGACGCUCGACGAGCCGCAGCGc -3'
miRNA:   3'- -GGCAGCUGCGAGCUGCUCGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 42726 0.67 0.550246
Target:  5'- gCGUCGGCGagUUGAUcGGCUGCgAGCGc -3'
miRNA:   3'- gGCAGCUGCg-AGCUGcUCGGCG-UCGC- -5'
16461 5' -58.9 NC_004084.1 + 42662 0.68 0.489934
Target:  5'- gCCGUCGAgaGCcugaauacUCGGCGcgaGGCUGcCAGCGa -3'
miRNA:   3'- -GGCAGCUg-CG--------AGCUGC---UCGGC-GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 42327 0.7 0.347065
Target:  5'- aCCGUCggGACGagaUCGACGAG--GCGGCGg -3'
miRNA:   3'- -GGCAG--CUGCg--AGCUGCUCggCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 42201 0.71 0.308955
Target:  5'- uCCGUCGACGaaCUCGcguucaACGAGUCGaAGCGc -3'
miRNA:   3'- -GGCAGCUGC--GAGC------UGCUCGGCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 42006 0.69 0.388422
Target:  5'- gCCGUCuuUGCUCGAguGGCCGUcGCGa -3'
miRNA:   3'- -GGCAGcuGCGAGCUgcUCGGCGuCGC- -5'
16461 5' -58.9 NC_004084.1 + 41908 0.67 0.529844
Target:  5'- aCCG-CGGCGCgCGAuCGccuGCUGUGGCGa -3'
miRNA:   3'- -GGCaGCUGCGaGCU-GCu--CGGCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.