miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 5' -58.9 NC_004084.1 + 49323 0.69 0.397073
Target:  5'- cUCGUCGAcauCGCccggUCGGCGuaCCGCGGCGa -3'
miRNA:   3'- -GGCAGCU---GCG----AGCUGCucGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 36822 0.71 0.308955
Target:  5'- gCGUCGACGaacgccgaUCGaACGAGCCGCGa-- -3'
miRNA:   3'- gGCAGCUGCg-------AGC-UGCUCGGCGUcgc -5'
16461 5' -58.9 NC_004084.1 + 42201 0.71 0.308955
Target:  5'- uCCGUCGACGaaCUCGcguucaACGAGUCGaAGCGc -3'
miRNA:   3'- -GGCAGCUGC--GAGC------UGCUCGGCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 12214 0.71 0.32305
Target:  5'- aUCGUCGACGCaucCGACGAcgaucucGCCGCcuaccAGCu -3'
miRNA:   3'- -GGCAGCUGCGa--GCUGCU-------CGGCG-----UCGc -5'
16461 5' -58.9 NC_004084.1 + 42327 0.7 0.347065
Target:  5'- aCCGUCggGACGagaUCGACGAG--GCGGCGg -3'
miRNA:   3'- -GGCAG--CUGCg--AGCUGCUCggCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 27251 0.7 0.371496
Target:  5'- aCCGgaacCG-CGCUCGACGAGaucuCGCGGUc -3'
miRNA:   3'- -GGCa---GCuGCGAGCUGCUCg---GCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 39618 0.7 0.371496
Target:  5'- gCCGgCGACGUccUCGACGAGUCGaucguacGCGa -3'
miRNA:   3'- -GGCaGCUGCG--AGCUGCUCGGCgu-----CGC- -5'
16461 5' -58.9 NC_004084.1 + 47571 0.7 0.379896
Target:  5'- gCCGUUcgagGACGUUCG-CGAGC-GCGGUGg -3'
miRNA:   3'- -GGCAG----CUGCGAGCuGCUCGgCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 21707 0.69 0.388422
Target:  5'- aCGUCGGCGaccgUCGACGAGauCCGCGaCGu -3'
miRNA:   3'- gGCAGCUGCg---AGCUGCUC--GGCGUcGC- -5'
16461 5' -58.9 NC_004084.1 + 57408 0.71 0.308955
Target:  5'- gCGUCGACGUcgcCGGCGAGCuCGaGGUGg -3'
miRNA:   3'- gGCAGCUGCGa--GCUGCUCG-GCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 30574 0.71 0.301727
Target:  5'- gCGgCGACGgUCGGCGAaCCGgAGCGg -3'
miRNA:   3'- gGCaGCUGCgAGCUGCUcGGCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 29734 0.71 0.301727
Target:  5'- gCCGUCcGCccaguGCUCGACGuugagcucGCUGCGGCGg -3'
miRNA:   3'- -GGCAGcUG-----CGAGCUGCu-------CGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 55060 0.75 0.169893
Target:  5'- aCCGUCGACGCacgUCGACGA-CCaauCGGCGg -3'
miRNA:   3'- -GGCAGCUGCG---AGCUGCUcGGc--GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 31111 0.75 0.18839
Target:  5'- aCgGUCGAauaucaGCUCGuCGAGCCGC-GCGc -3'
miRNA:   3'- -GgCAGCUg-----CGAGCuGCUCGGCGuCGC- -5'
16461 5' -58.9 NC_004084.1 + 20056 0.74 0.193284
Target:  5'- -aGUCGAUGCUgucgauacCGACGAcGCCGgAGCGa -3'
miRNA:   3'- ggCAGCUGCGA--------GCUGCU-CGGCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 2288 0.74 0.198288
Target:  5'- -gGUCGACGC-CGACGAcaCUGCGGCGc -3'
miRNA:   3'- ggCAGCUGCGaGCUGCUc-GGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 9913 0.73 0.248575
Target:  5'- aCGUCcaagacaagaGCGcCUCGACGAGCCuCAGCGa -3'
miRNA:   3'- gGCAGc---------UGC-GAGCUGCUCGGcGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 17047 0.73 0.254772
Target:  5'- cCCGUCGAUGCggUGACuGAcGUCGCAaGCGg -3'
miRNA:   3'- -GGCAGCUGCGa-GCUG-CU-CGGCGU-CGC- -5'
16461 5' -58.9 NC_004084.1 + 19089 0.72 0.280827
Target:  5'- aCGUCGACG-UCGAUcAGCacCGCGGCGg -3'
miRNA:   3'- gGCAGCUGCgAGCUGcUCG--GCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 39858 0.71 0.29463
Target:  5'- gCCG-CGGCGCcgUCGAgcacgcUGAGCUGCAGUGc -3'
miRNA:   3'- -GGCaGCUGCG--AGCU------GCUCGGCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.