miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 5' -58.9 NC_004084.1 + 31111 0.75 0.18839
Target:  5'- aCgGUCGAauaucaGCUCGuCGAGCCGC-GCGc -3'
miRNA:   3'- -GgCAGCUg-----CGAGCuGCUCGGCGuCGC- -5'
16461 5' -58.9 NC_004084.1 + 55060 0.75 0.169893
Target:  5'- aCCGUCGACGCacgUCGACGA-CCaauCGGCGg -3'
miRNA:   3'- -GGCAGCUGCG---AGCUGCUcGGc--GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 43399 1.09 0.000615
Target:  5'- gCCGUCGACGCUCGACGAGCCGCAGCGc -3'
miRNA:   3'- -GGCAGCUGCGAGCUGCUCGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 42201 0.71 0.308955
Target:  5'- uCCGUCGACGaaCUCGcguucaACGAGUCGaAGCGc -3'
miRNA:   3'- -GGCAGCUGC--GAGC------UGCUCGGCgUCGC- -5'
16461 5' -58.9 NC_004084.1 + 12214 0.71 0.32305
Target:  5'- aUCGUCGACGCaucCGACGAcgaucucGCCGCcuaccAGCu -3'
miRNA:   3'- -GGCAGCUGCGa--GCUGCU-------CGGCG-----UCGc -5'
16461 5' -58.9 NC_004084.1 + 45676 0.68 0.451482
Target:  5'- aCgGUCGGCG-UCGACGAGaUCGUGcGCGg -3'
miRNA:   3'- -GgCAGCUGCgAGCUGCUC-GGCGU-CGC- -5'
16461 5' -58.9 NC_004084.1 + 41081 0.68 0.442128
Target:  5'- aCGUCGACGagaCGauGCGGGCCGUcgccGCGg -3'
miRNA:   3'- gGCAGCUGCga-GC--UGCUCGGCGu---CGC- -5'
16461 5' -58.9 NC_004084.1 + 51448 0.69 0.432885
Target:  5'- aCGUUGGCGa-----GGGCCGCGGCGg -3'
miRNA:   3'- gGCAGCUGCgagcugCUCGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 51232 0.69 0.423755
Target:  5'- gCGUCGAgcaGCUCGACGuccGGaUCGCuGCGa -3'
miRNA:   3'- gGCAGCUg--CGAGCUGC---UC-GGCGuCGC- -5'
16461 5' -58.9 NC_004084.1 + 57781 0.69 0.414742
Target:  5'- gCCGUCGAggaGCUccaCGACGAGaUCGcCAGCu -3'
miRNA:   3'- -GGCAGCUg--CGA---GCUGCUC-GGC-GUCGc -5'
16461 5' -58.9 NC_004084.1 + 28786 0.69 0.405847
Target:  5'- gUCGUCGACGUcCG--GAGCCGaCAGCc -3'
miRNA:   3'- -GGCAGCUGCGaGCugCUCGGC-GUCGc -5'
16461 5' -58.9 NC_004084.1 + 12145 0.69 0.403202
Target:  5'- uCCGUCGACGaagCGAUGgaugucgcacacgaGGUCGCAGgGu -3'
miRNA:   3'- -GGCAGCUGCga-GCUGC--------------UCGGCGUCgC- -5'
16461 5' -58.9 NC_004084.1 + 49323 0.69 0.397073
Target:  5'- cUCGUCGAcauCGCccggUCGGCGuaCCGCGGCGa -3'
miRNA:   3'- -GGCAGCU---GCG----AGCUGCucGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 21707 0.69 0.388422
Target:  5'- aCGUCGGCGaccgUCGACGAGauCCGCGaCGu -3'
miRNA:   3'- gGCAGCUGCg---AGCUGCUC--GGCGUcGC- -5'
16461 5' -58.9 NC_004084.1 + 47571 0.7 0.379896
Target:  5'- gCCGUUcgagGACGUUCG-CGAGC-GCGGUGg -3'
miRNA:   3'- -GGCAG----CUGCGAGCuGCUCGgCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 39618 0.7 0.371496
Target:  5'- gCCGgCGACGUccUCGACGAGUCGaucguacGCGa -3'
miRNA:   3'- -GGCaGCUGCG--AGCUGCUCGGCgu-----CGC- -5'
16461 5' -58.9 NC_004084.1 + 27251 0.7 0.371496
Target:  5'- aCCGgaacCG-CGCUCGACGAGaucuCGCGGUc -3'
miRNA:   3'- -GGCa---GCuGCGAGCUGCUCg---GCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 42327 0.7 0.347065
Target:  5'- aCCGUCggGACGagaUCGACGAG--GCGGCGg -3'
miRNA:   3'- -GGCAG--CUGCg--AGCUGCUCggCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 58126 0.77 0.123809
Target:  5'- cUCGUCGGCGgUCGucguCGAGCCGCcGUGa -3'
miRNA:   3'- -GGCAGCUGCgAGCu---GCUCGGCGuCGC- -5'
16461 5' -58.9 NC_004084.1 + 1179 0.66 0.612646
Target:  5'- aUCGcCGACGCggUCGugGAcguaGUCGCguaAGCGg -3'
miRNA:   3'- -GGCaGCUGCG--AGCugCU----CGGCG---UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.