miRNA display CGI


Results 1 - 20 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 5' -58.9 NC_004084.1 + 41362 0.66 0.612646
Target:  5'- aCCGcuugCGACGUcagucaccgcaUCGACGGGC-GCAGaCGc -3'
miRNA:   3'- -GGCa---GCUGCG-----------AGCUGCUCGgCGUC-GC- -5'
16461 5' -58.9 NC_004084.1 + 56609 0.67 0.550246
Target:  5'- gUCGUCGcCGgUCGGCGAGUucgccggauCGUGGCu -3'
miRNA:   3'- -GGCAGCuGCgAGCUGCUCG---------GCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 1547 0.67 0.519746
Target:  5'- aCCGaggCGACgGC-CGuCGAGCCGgAGCc -3'
miRNA:   3'- -GGCa--GCUG-CGaGCuGCUCGGCgUCGc -5'
16461 5' -58.9 NC_004084.1 + 58126 0.77 0.123809
Target:  5'- cUCGUCGGCGgUCGucguCGAGCCGCcGUGa -3'
miRNA:   3'- -GGCAGCUGCgAGCu---GCUCGGCGuCGC- -5'
16461 5' -58.9 NC_004084.1 + 686 0.66 0.581274
Target:  5'- uUCGUCGACGUccUCGAgCGGuGCaCGCAcuguGCGu -3'
miRNA:   3'- -GGCAGCUGCG--AGCU-GCU-CG-GCGU----CGC- -5'
16461 5' -58.9 NC_004084.1 + 55252 0.66 0.570883
Target:  5'- gCCGUCGACGacgUCuACG-GUCgGCGGCGu -3'
miRNA:   3'- -GGCAGCUGCg--AGcUGCuCGG-CGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 40525 0.66 0.570883
Target:  5'- aCGUCGGCGUcuUCaGACGAGCuCGaaaGGUc -3'
miRNA:   3'- gGCAGCUGCG--AG-CUGCUCG-GCg--UCGc -5'
16461 5' -58.9 NC_004084.1 + 14093 0.66 0.570883
Target:  5'- aCGUCGAUG-UCGuCGuGGCgGCAGUGu -3'
miRNA:   3'- gGCAGCUGCgAGCuGC-UCGgCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 26295 0.66 0.560538
Target:  5'- -aGUCGACcuccugguGCUCGACGAcgaGCUGCucgAGCu -3'
miRNA:   3'- ggCAGCUG--------CGAGCUGCU---CGGCG---UCGc -5'
16461 5' -58.9 NC_004084.1 + 42726 0.67 0.550246
Target:  5'- gCGUCGGCGagUUGAUcGGCUGCgAGCGc -3'
miRNA:   3'- gGCAGCUGCg-AGCUGcUCGGCG-UCGC- -5'
16461 5' -58.9 NC_004084.1 + 46207 0.66 0.559507
Target:  5'- gUCGUCgGAUGCgUCGACGAucaucaucaggucGCCGCuGgGg -3'
miRNA:   3'- -GGCAG-CUGCG-AGCUGCU-------------CGGCGuCgC- -5'
16461 5' -58.9 NC_004084.1 + 27326 0.66 0.560538
Target:  5'- aCCGUUcACGUUCGA-GGGaCGCGGUGg -3'
miRNA:   3'- -GGCAGcUGCGAGCUgCUCgGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 1179 0.66 0.612646
Target:  5'- aUCGcCGACGCggUCGugGAcguaGUCGCguaAGCGg -3'
miRNA:   3'- -GGCaGCUGCG--AGCugCU----CGGCG---UCGC- -5'
16461 5' -58.9 NC_004084.1 + 55346 0.67 0.550246
Target:  5'- aCGUCGACGagcggcccgUCGACGAGUUccucgaggGUGGCGa -3'
miRNA:   3'- gGCAGCUGCg--------AGCUGCUCGG--------CGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 904 0.66 0.612646
Target:  5'- gCUGUCGGCGUcgUCGGaguucGCUGCGGCc -3'
miRNA:   3'- -GGCAGCUGCG--AGCUgcu--CGGCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 5273 0.66 0.560538
Target:  5'- cUCGUCGA----CGACGucCCGCAGCGg -3'
miRNA:   3'- -GGCAGCUgcgaGCUGCucGGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 49072 0.67 0.550246
Target:  5'- aCCGUCGACGUgCGACG-GUCGgGagaggucucGCGu -3'
miRNA:   3'- -GGCAGCUGCGaGCUGCuCGGCgU---------CGC- -5'
16461 5' -58.9 NC_004084.1 + 8399 0.67 0.528831
Target:  5'- uUCGUCGGauguUGCUCGuguucaGCGGGCCGUuguacgcaucaccAGCGu -3'
miRNA:   3'- -GGCAGCU----GCGAGC------UGCUCGGCG-------------UCGC- -5'
16461 5' -58.9 NC_004084.1 + 50955 0.66 0.606354
Target:  5'- gCCGUCGcCGCUCGAgucgccgucggacucCGAGgucucgccaCCGuCGGCa -3'
miRNA:   3'- -GGCAGCuGCGAGCU---------------GCUC---------GGC-GUCGc -5'
16461 5' -58.9 NC_004084.1 + 48621 0.66 0.570883
Target:  5'- gCCGUgcauguggaGGCGCugUCGaACG-GCCGCAGCc -3'
miRNA:   3'- -GGCAg--------CUGCG--AGC-UGCuCGGCGUCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.