miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16461 5' -58.9 NC_004084.1 + 12791 0.67 0.519746
Target:  5'- gCCGUCGACGaC-CGACaGGuuGuCAGCc -3'
miRNA:   3'- -GGCAGCUGC-GaGCUGcUCggC-GUCGc -5'
16461 5' -58.9 NC_004084.1 + 1547 0.67 0.519746
Target:  5'- aCCGaggCGACgGC-CGuCGAGCCGgAGCc -3'
miRNA:   3'- -GGCa--GCUG-CGaGCuGCUCGGCgUCGc -5'
16461 5' -58.9 NC_004084.1 + 27326 0.66 0.560538
Target:  5'- aCCGUUcACGUUCGA-GGGaCGCGGUGg -3'
miRNA:   3'- -GGCAGcUGCGAGCUgCUCgGCGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 50955 0.66 0.606354
Target:  5'- gCCGUCGcCGCUCGAgucgccgucggacucCGAGgucucgccaCCGuCGGCa -3'
miRNA:   3'- -GGCAGCuGCGAGCU---------------GCUC---------GGC-GUCGc -5'
16461 5' -58.9 NC_004084.1 + 36610 0.69 0.388422
Target:  5'- aCCGUCGACGCUgaCGuuGAGgUGCAuCGg -3'
miRNA:   3'- -GGCAGCUGCGA--GCugCUCgGCGUcGC- -5'
16461 5' -58.9 NC_004084.1 + 23367 0.68 0.480173
Target:  5'- aCGUCGACGUUCGGauccGUCGCgAGCc -3'
miRNA:   3'- gGCAGCUGCGAGCUgcu-CGGCG-UCGc -5'
16461 5' -58.9 NC_004084.1 + 56609 0.67 0.550246
Target:  5'- gUCGUCGcCGgUCGGCGAGUucgccggauCGUGGCu -3'
miRNA:   3'- -GGCAGCuGCgAGCUGCUCG---------GCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 904 0.66 0.612646
Target:  5'- gCUGUCGGCGUcgUCGGaguucGCUGCGGCc -3'
miRNA:   3'- -GGCAGCUGCG--AGCUgcu--CGGCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 30929 0.68 0.489934
Target:  5'- aCGUCGAuCGCUCGuCGAcGUCG-AGCu -3'
miRNA:   3'- gGCAGCU-GCGAGCuGCU-CGGCgUCGc -5'
16461 5' -58.9 NC_004084.1 + 1179 0.66 0.612646
Target:  5'- aUCGcCGACGCggUCGugGAcguaGUCGCguaAGCGg -3'
miRNA:   3'- -GGCaGCUGCG--AGCugCU----CGGCG---UCGC- -5'
16461 5' -58.9 NC_004084.1 + 8399 0.67 0.528831
Target:  5'- uUCGUCGGauguUGCUCGuguucaGCGGGCCGUuguacgcaucaccAGCGu -3'
miRNA:   3'- -GGCAGCU----GCGAGC------UGCUCGGCG-------------UCGC- -5'
16461 5' -58.9 NC_004084.1 + 638 0.67 0.519746
Target:  5'- cUCGUCGugGagcucCUCGACGGcGUCGUGGUa -3'
miRNA:   3'- -GGCAGCugC-----GAGCUGCU-CGGCGUCGc -5'
16461 5' -58.9 NC_004084.1 + 55346 0.67 0.550246
Target:  5'- aCGUCGACGagcggcccgUCGACGAGUUccucgaggGUGGCGa -3'
miRNA:   3'- gGCAGCUGCg--------AGCUGCUCGG--------CGUCGC- -5'
16461 5' -58.9 NC_004084.1 + 26295 0.66 0.560538
Target:  5'- -aGUCGACcuccugguGCUCGACGAcgaGCUGCucgAGCu -3'
miRNA:   3'- ggCAGCUG--------CGAGCUGCU---CGGCG---UCGc -5'
16461 5' -58.9 NC_004084.1 + 40525 0.66 0.570883
Target:  5'- aCGUCGGCGUcuUCaGACGAGCuCGaaaGGUc -3'
miRNA:   3'- gGCAGCUGCG--AG-CUGCUCG-GCg--UCGc -5'
16461 5' -58.9 NC_004084.1 + 686 0.66 0.581274
Target:  5'- uUCGUCGACGUccUCGAgCGGuGCaCGCAcuguGCGu -3'
miRNA:   3'- -GGCAGCUGCG--AGCU-GCU-CG-GCGU----CGC- -5'
16461 5' -58.9 NC_004084.1 + 52928 0.7 0.371496
Target:  5'- cUCGUCGACug-CGACGAucugGCCGuCGGCGu -3'
miRNA:   3'- -GGCAGCUGcgaGCUGCU----CGGC-GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 21610 0.69 0.388422
Target:  5'- uUCGUCGACGCUCGucgagaACGAaGUCGagGGUGa -3'
miRNA:   3'- -GGCAGCUGCGAGC------UGCU-CGGCg-UCGC- -5'
16461 5' -58.9 NC_004084.1 + 48804 0.68 0.444923
Target:  5'- gCGUUGAuCGCUCGAagacgcgcacguaCGAGCCGaaugaucgcuuucuuCGGCGa -3'
miRNA:   3'- gGCAGCU-GCGAGCU-------------GCUCGGC---------------GUCGC- -5'
16461 5' -58.9 NC_004084.1 + 7191 0.68 0.469547
Target:  5'- aCGUCGAgcUGCUCGACGcaccacgcccaguAGCCcgcgcCAGCGc -3'
miRNA:   3'- gGCAGCU--GCGAGCUGC-------------UCGGc----GUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.