miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16462 5' -52.9 NC_004084.1 + 29212 0.66 0.864302
Target:  5'- --gUCGaCGCGCUcuggaacaucGACGccGAGCAgGGCg -3'
miRNA:   3'- agaAGUaGCGCGA----------CUGC--UUCGUgCCG- -5'
16462 5' -52.9 NC_004084.1 + 480 0.66 0.847431
Target:  5'- -gUUCGUCGCcucgauccuGCUGGCGcAGUucaaGCGGUc -3'
miRNA:   3'- agAAGUAGCG---------CGACUGCuUCG----UGCCG- -5'
16462 5' -52.9 NC_004084.1 + 31361 0.66 0.846563
Target:  5'- gUCgagCAUCGCGCgauCGAcaccagagaguucAGCcCGGCg -3'
miRNA:   3'- -AGaa-GUAGCGCGacuGCU-------------UCGuGCCG- -5'
16462 5' -52.9 NC_004084.1 + 30095 0.66 0.838645
Target:  5'- -gUUCAUCGUGUagcuccgGACGucGCugGGg -3'
miRNA:   3'- agAAGUAGCGCGa------CUGCuuCGugCCg -5'
16462 5' -52.9 NC_004084.1 + 26522 0.66 0.837754
Target:  5'- ---cCAUCGCGaggGugGAGGCACuuaccgcguccauGGCc -3'
miRNA:   3'- agaaGUAGCGCga-CugCUUCGUG-------------CCG- -5'
16462 5' -52.9 NC_004084.1 + 25444 0.67 0.817612
Target:  5'- --cUCAUCGUGaUGACGAacguGGCuucgagguucgcggGCGGCg -3'
miRNA:   3'- agaAGUAGCGCgACUGCU----UCG--------------UGCCG- -5'
16462 5' -52.9 NC_004084.1 + 21548 0.67 0.810997
Target:  5'- aUCUUcCGUCGgcuugaguccaCGCUGcCGGAGCauccguuucGCGGCu -3'
miRNA:   3'- -AGAA-GUAGC-----------GCGACuGCUUCG---------UGCCG- -5'
16462 5' -52.9 NC_004084.1 + 57404 0.67 0.810997
Target:  5'- ----gAUCGCGUcGACGucGC-CGGCg -3'
miRNA:   3'- agaagUAGCGCGaCUGCuuCGuGCCG- -5'
16462 5' -52.9 NC_004084.1 + 5229 0.67 0.801383
Target:  5'- gCUUCcaGUCGCGacgGACGAAcacGCugGGg -3'
miRNA:   3'- aGAAG--UAGCGCga-CUGCUU---CGugCCg -5'
16462 5' -52.9 NC_004084.1 + 55054 0.68 0.771504
Target:  5'- aUCUUCAcCGgGUUGaACGGuGGC-CGGCg -3'
miRNA:   3'- -AGAAGUaGCgCGAC-UGCU-UCGuGCCG- -5'
16462 5' -52.9 NC_004084.1 + 14892 0.68 0.750831
Target:  5'- gCUUCGUCaGCGC-GAUGAAG-ACGuGCu -3'
miRNA:   3'- aGAAGUAG-CGCGaCUGCUUCgUGC-CG- -5'
16462 5' -52.9 NC_004084.1 + 49776 0.68 0.750831
Target:  5'- uUCgggCAUCGCGauuACGGAGUcgACGGCc -3'
miRNA:   3'- -AGaa-GUAGCGCgacUGCUUCG--UGCCG- -5'
16462 5' -52.9 NC_004084.1 + 18559 0.68 0.740303
Target:  5'- --cUCAgCGUGCUcGACGgcGCcGCGGCc -3'
miRNA:   3'- agaAGUaGCGCGA-CUGCuuCG-UGCCG- -5'
16462 5' -52.9 NC_004084.1 + 8312 0.68 0.740303
Target:  5'- gCUUCGUCcagacggcgucgGCGCgGAUGAuccAGC-CGGCg -3'
miRNA:   3'- aGAAGUAG------------CGCGaCUGCU---UCGuGCCG- -5'
16462 5' -52.9 NC_004084.1 + 37912 0.69 0.697198
Target:  5'- cUCUUCGUCGauCUGAUGucGUcguCGGCg -3'
miRNA:   3'- -AGAAGUAGCgcGACUGCuuCGu--GCCG- -5'
16462 5' -52.9 NC_004084.1 + 56474 0.69 0.697198
Target:  5'- gUCUUCcgUGaCGCUG-CGAAGgagauGCGGCg -3'
miRNA:   3'- -AGAAGuaGC-GCGACuGCUUCg----UGCCG- -5'
16462 5' -52.9 NC_004084.1 + 3830 0.69 0.675212
Target:  5'- gUCUUCGUCGaCGCcGACGAcGGCuccacCGGa -3'
miRNA:   3'- -AGAAGUAGC-GCGaCUGCU-UCGu----GCCg -5'
16462 5' -52.9 NC_004084.1 + 48426 0.7 0.641949
Target:  5'- aUCUUCGUCGaCGUcGuCGGccAGUACGGUg -3'
miRNA:   3'- -AGAAGUAGC-GCGaCuGCU--UCGUGCCG- -5'
16462 5' -52.9 NC_004084.1 + 36611 0.7 0.630828
Target:  5'- ---cCGUCGaCGCUGACGuugagguGCAuCGGCu -3'
miRNA:   3'- agaaGUAGC-GCGACUGCuu-----CGU-GCCG- -5'
16462 5' -52.9 NC_004084.1 + 56569 0.7 0.630828
Target:  5'- gUCgucCGUCGCGCUG-CaGGAGCcacaccgugaacGCGGCg -3'
miRNA:   3'- -AGaa-GUAGCGCGACuG-CUUCG------------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.