miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16463 3' -57.7 NC_004084.1 + 39837 0.66 0.609017
Target:  5'- uGGCGCUcgaGUCcauCGGCGGCCgcgGCgCCGu -3'
miRNA:   3'- -CUGCGG---UAGau-GCUGCCGGa--CGaGGU- -5'
16463 3' -57.7 NC_004084.1 + 28846 0.66 0.598195
Target:  5'- cGACGCCcacccgGCGAuggcccucaaCGGCCUGCUUa- -3'
miRNA:   3'- -CUGCGGuaga--UGCU----------GCCGGACGAGgu -5'
16463 3' -57.7 NC_004084.1 + 5174 0.66 0.555266
Target:  5'- -uCGCCGUCgACGACcGCCcGCUCg- -3'
miRNA:   3'- cuGCGGUAGaUGCUGcCGGaCGAGgu -5'
16463 3' -57.7 NC_004084.1 + 27070 0.66 0.555266
Target:  5'- cGAUGCUcgacGUCgACGACGaaCUGCUCCGg -3'
miRNA:   3'- -CUGCGG----UAGaUGCUGCcgGACGAGGU- -5'
16463 3' -57.7 NC_004084.1 + 50110 0.66 0.552079
Target:  5'- cGACGCCGUCUG-GACGaagcccaacgggauGCCgaGUUCCGc -3'
miRNA:   3'- -CUGCGGUAGAUgCUGC--------------CGGa-CGAGGU- -5'
16463 3' -57.7 NC_004084.1 + 38189 0.67 0.544664
Target:  5'- cGGCGUCAUCUcgaaugacguCGACGuGCUUGCgCCGg -3'
miRNA:   3'- -CUGCGGUAGAu---------GCUGC-CGGACGaGGU- -5'
16463 3' -57.7 NC_004084.1 + 18563 0.67 0.523666
Target:  5'- --gGCCGacggggagaUC-GCGACGGUCUGCUUCGg -3'
miRNA:   3'- cugCGGU---------AGaUGCUGCCGGACGAGGU- -5'
16463 3' -57.7 NC_004084.1 + 55049 0.67 0.502985
Target:  5'- -cCGCCAUCUucaccggguugaACGGUGGCCggcgcGCUCCu -3'
miRNA:   3'- cuGCGGUAGA------------UGCUGCCGGa----CGAGGu -5'
16463 3' -57.7 NC_004084.1 + 40069 0.67 0.492778
Target:  5'- cAC-UCAUCcgGCGGCuGGCCUGCUUCAc -3'
miRNA:   3'- cUGcGGUAGa-UGCUG-CCGGACGAGGU- -5'
16463 3' -57.7 NC_004084.1 + 57777 0.68 0.472659
Target:  5'- cGACGCCGUCgaggagcuccACGACGagaucGCCaGCUUCAa -3'
miRNA:   3'- -CUGCGGUAGa---------UGCUGC-----CGGaCGAGGU- -5'
16463 3' -57.7 NC_004084.1 + 40172 0.68 0.472659
Target:  5'- aGACGUCAUCgg-GAUGGCCaaCUCCGg -3'
miRNA:   3'- -CUGCGGUAGaugCUGCCGGacGAGGU- -5'
16463 3' -57.7 NC_004084.1 + 909 0.68 0.462755
Target:  5'- cGGCGUCGUCggaguuCGcuGCGGCCUGCUg-- -3'
miRNA:   3'- -CUGCGGUAGau----GC--UGCCGGACGAggu -5'
16463 3' -57.7 NC_004084.1 + 27324 0.69 0.414963
Target:  5'- cGACGUaCGUCcucuuuUACGAgGGUCUGCUCUg -3'
miRNA:   3'- -CUGCG-GUAG------AUGCUgCCGGACGAGGu -5'
16463 3' -57.7 NC_004084.1 + 52527 0.69 0.405772
Target:  5'- cGGCGUCAgg-ACGauccccgugGCGGUCUGCUCCu -3'
miRNA:   3'- -CUGCGGUagaUGC---------UGCCGGACGAGGu -5'
16463 3' -57.7 NC_004084.1 + 47383 0.7 0.345158
Target:  5'- cGCGUCGU---CGACGGCgaGCUCCAg -3'
miRNA:   3'- cUGCGGUAgauGCUGCCGgaCGAGGU- -5'
16463 3' -57.7 NC_004084.1 + 22448 0.74 0.209151
Target:  5'- -cCGCCGUCUucgggggcgcucGCGACGGCUgcgugguggcgGCUCCAg -3'
miRNA:   3'- cuGCGGUAGA------------UGCUGCCGGa----------CGAGGU- -5'
16463 3' -57.7 NC_004084.1 + 38454 0.74 0.209151
Target:  5'- cGACGUCGUCaACcACGGCCgGCUCUAu -3'
miRNA:   3'- -CUGCGGUAGaUGcUGCCGGaCGAGGU- -5'
16463 3' -57.7 NC_004084.1 + 44740 1.09 0.000623
Target:  5'- cGACGCCAUCUACGACGGCCUGCUCCAg -3'
miRNA:   3'- -CUGCGGUAGAUGCUGCCGGACGAGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.