Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16463 | 3' | -57.7 | NC_004084.1 | + | 909 | 0.68 | 0.462755 |
Target: 5'- cGGCGUCGUCggaguuCGcuGCGGCCUGCUg-- -3' miRNA: 3'- -CUGCGGUAGau----GC--UGCCGGACGAggu -5' |
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16463 | 3' | -57.7 | NC_004084.1 | + | 5174 | 0.66 | 0.555266 |
Target: 5'- -uCGCCGUCgACGACcGCCcGCUCg- -3' miRNA: 3'- cuGCGGUAGaUGCUGcCGGaCGAGgu -5' |
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16463 | 3' | -57.7 | NC_004084.1 | + | 18563 | 0.67 | 0.523666 |
Target: 5'- --gGCCGacggggagaUC-GCGACGGUCUGCUUCGg -3' miRNA: 3'- cugCGGU---------AGaUGCUGCCGGACGAGGU- -5' |
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16463 | 3' | -57.7 | NC_004084.1 | + | 22448 | 0.74 | 0.209151 |
Target: 5'- -cCGCCGUCUucgggggcgcucGCGACGGCUgcgugguggcgGCUCCAg -3' miRNA: 3'- cuGCGGUAGA------------UGCUGCCGGa----------CGAGGU- -5' |
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16463 | 3' | -57.7 | NC_004084.1 | + | 27070 | 0.66 | 0.555266 |
Target: 5'- cGAUGCUcgacGUCgACGACGaaCUGCUCCGg -3' miRNA: 3'- -CUGCGG----UAGaUGCUGCcgGACGAGGU- -5' |
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16463 | 3' | -57.7 | NC_004084.1 | + | 27324 | 0.69 | 0.414963 |
Target: 5'- cGACGUaCGUCcucuuuUACGAgGGUCUGCUCUg -3' miRNA: 3'- -CUGCG-GUAG------AUGCUgCCGGACGAGGu -5' |
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16463 | 3' | -57.7 | NC_004084.1 | + | 28846 | 0.66 | 0.598195 |
Target: 5'- cGACGCCcacccgGCGAuggcccucaaCGGCCUGCUUa- -3' miRNA: 3'- -CUGCGGuaga--UGCU----------GCCGGACGAGgu -5' |
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16463 | 3' | -57.7 | NC_004084.1 | + | 38189 | 0.67 | 0.544664 |
Target: 5'- cGGCGUCAUCUcgaaugacguCGACGuGCUUGCgCCGg -3' miRNA: 3'- -CUGCGGUAGAu---------GCUGC-CGGACGaGGU- -5' |
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16463 | 3' | -57.7 | NC_004084.1 | + | 38454 | 0.74 | 0.209151 |
Target: 5'- cGACGUCGUCaACcACGGCCgGCUCUAu -3' miRNA: 3'- -CUGCGGUAGaUGcUGCCGGaCGAGGU- -5' |
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16463 | 3' | -57.7 | NC_004084.1 | + | 39837 | 0.66 | 0.609017 |
Target: 5'- uGGCGCUcgaGUCcauCGGCGGCCgcgGCgCCGu -3' miRNA: 3'- -CUGCGG---UAGau-GCUGCCGGa--CGaGGU- -5' |
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16463 | 3' | -57.7 | NC_004084.1 | + | 40069 | 0.67 | 0.492778 |
Target: 5'- cAC-UCAUCcgGCGGCuGGCCUGCUUCAc -3' miRNA: 3'- cUGcGGUAGa-UGCUG-CCGGACGAGGU- -5' |
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16463 | 3' | -57.7 | NC_004084.1 | + | 40172 | 0.68 | 0.472659 |
Target: 5'- aGACGUCAUCgg-GAUGGCCaaCUCCGg -3' miRNA: 3'- -CUGCGGUAGaugCUGCCGGacGAGGU- -5' |
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16463 | 3' | -57.7 | NC_004084.1 | + | 44740 | 1.09 | 0.000623 |
Target: 5'- cGACGCCAUCUACGACGGCCUGCUCCAg -3' miRNA: 3'- -CUGCGGUAGAUGCUGCCGGACGAGGU- -5' |
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16463 | 3' | -57.7 | NC_004084.1 | + | 47383 | 0.7 | 0.345158 |
Target: 5'- cGCGUCGU---CGACGGCgaGCUCCAg -3' miRNA: 3'- cUGCGGUAgauGCUGCCGgaCGAGGU- -5' |
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16463 | 3' | -57.7 | NC_004084.1 | + | 50110 | 0.66 | 0.552079 |
Target: 5'- cGACGCCGUCUG-GACGaagcccaacgggauGCCgaGUUCCGc -3' miRNA: 3'- -CUGCGGUAGAUgCUGC--------------CGGa-CGAGGU- -5' |
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16463 | 3' | -57.7 | NC_004084.1 | + | 52527 | 0.69 | 0.405772 |
Target: 5'- cGGCGUCAgg-ACGauccccgugGCGGUCUGCUCCu -3' miRNA: 3'- -CUGCGGUagaUGC---------UGCCGGACGAGGu -5' |
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16463 | 3' | -57.7 | NC_004084.1 | + | 55049 | 0.67 | 0.502985 |
Target: 5'- -cCGCCAUCUucaccggguugaACGGUGGCCggcgcGCUCCu -3' miRNA: 3'- cuGCGGUAGA------------UGCUGCCGGa----CGAGGu -5' |
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16463 | 3' | -57.7 | NC_004084.1 | + | 57777 | 0.68 | 0.472659 |
Target: 5'- cGACGCCGUCgaggagcuccACGACGagaucGCCaGCUUCAa -3' miRNA: 3'- -CUGCGGUAGa---------UGCUGC-----CGGaCGAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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