miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16463 5' -53.3 NC_004084.1 + 22807 0.66 0.839281
Target:  5'- cGUCGAGA-GGGc-GUCACGGauCGaUCCg -3'
miRNA:   3'- -CAGCUCUaCCCuuCAGUGCU--GCcAGG- -5'
16463 5' -53.3 NC_004084.1 + 18978 0.67 0.821337
Target:  5'- aGUCGgccGGcgGGGAAGUCGua--GGUCCc -3'
miRNA:   3'- -CAGC---UCuaCCCUUCAGUgcugCCAGG- -5'
16463 5' -53.3 NC_004084.1 + 22453 0.67 0.821337
Target:  5'- aUCGAGucGGGAcuGGUCACGGCcG-CCg -3'
miRNA:   3'- cAGCUCuaCCCU--UCAGUGCUGcCaGG- -5'
16463 5' -53.3 NC_004084.1 + 41611 0.67 0.812063
Target:  5'- cGUCGAGGac-GAAcgcGagGCGACGGUCCg -3'
miRNA:   3'- -CAGCUCUaccCUU---CagUGCUGCCAGG- -5'
16463 5' -53.3 NC_004084.1 + 49645 0.67 0.812063
Target:  5'- cGUCGAGAUGG--AGUCGgcguacCGGCugaagccggguGGUCCg -3'
miRNA:   3'- -CAGCUCUACCcuUCAGU------GCUG-----------CCAGG- -5'
16463 5' -53.3 NC_004084.1 + 19810 0.67 0.792964
Target:  5'- -------cGGGGAGUCguuccGCGACGGUCUc -3'
miRNA:   3'- cagcucuaCCCUUCAG-----UGCUGCCAGG- -5'
16463 5' -53.3 NC_004084.1 + 54191 0.68 0.732019
Target:  5'- cGUCG-GGUGGGGaacgaucuguGGUCACuGCGGUaacaCCg -3'
miRNA:   3'- -CAGCuCUACCCU----------UCAGUGcUGCCA----GG- -5'
16463 5' -53.3 NC_004084.1 + 18112 0.69 0.721447
Target:  5'- gGUCGAGGUcGGGGAuGUC-CGGCucGGcCCg -3'
miRNA:   3'- -CAGCUCUA-CCCUU-CAGuGCUG--CCaGG- -5'
16463 5' -53.3 NC_004084.1 + 32684 0.69 0.710787
Target:  5'- uUCGAGgcGGcGAAGUC-UGACGGUa- -3'
miRNA:   3'- cAGCUCuaCC-CUUCAGuGCUGCCAgg -5'
16463 5' -53.3 NC_004084.1 + 35269 0.69 0.689249
Target:  5'- -cCGAGG-GGGAAGUCcuCGGCgcuggggaGGUCCu -3'
miRNA:   3'- caGCUCUaCCCUUCAGu-GCUG--------CCAGG- -5'
16463 5' -53.3 NC_004084.1 + 51889 0.7 0.634635
Target:  5'- gGUCGAGAcUGGGAcuGGcUCACgcagaGugGGUUCa -3'
miRNA:   3'- -CAGCUCU-ACCCU--UC-AGUG-----CugCCAGG- -5'
16463 5' -53.3 NC_004084.1 + 52487 0.71 0.601756
Target:  5'- cGUCGGGAUagacGAAGUCcaguUGAUGGUCCa -3'
miRNA:   3'- -CAGCUCUAcc--CUUCAGu---GCUGCCAGG- -5'
16463 5' -53.3 NC_004084.1 + 18555 0.77 0.283953
Target:  5'- cUCGGGugggccgacGGGGAGaUCGCGACGGUCUg -3'
miRNA:   3'- cAGCUCua-------CCCUUC-AGUGCUGCCAGG- -5'
16463 5' -53.3 NC_004084.1 + 44785 1.11 0.001511
Target:  5'- gGUCGAGAUGGGAAGUCACGACGGUCCc -3'
miRNA:   3'- -CAGCUCUACCCUUCAGUGCUGCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.