Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16463 | 5' | -53.3 | NC_004084.1 | + | 44785 | 1.11 | 0.001511 |
Target: 5'- gGUCGAGAUGGGAAGUCACGACGGUCCc -3' miRNA: 3'- -CAGCUCUACCCUUCAGUGCUGCCAGG- -5' |
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16463 | 5' | -53.3 | NC_004084.1 | + | 18555 | 0.77 | 0.283953 |
Target: 5'- cUCGGGugggccgacGGGGAGaUCGCGACGGUCUg -3' miRNA: 3'- cAGCUCua-------CCCUUC-AGUGCUGCCAGG- -5' |
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16463 | 5' | -53.3 | NC_004084.1 | + | 51889 | 0.7 | 0.634635 |
Target: 5'- gGUCGAGAcUGGGAcuGGcUCACgcagaGugGGUUCa -3' miRNA: 3'- -CAGCUCU-ACCCU--UC-AGUG-----CugCCAGG- -5' |
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16463 | 5' | -53.3 | NC_004084.1 | + | 54191 | 0.68 | 0.732019 |
Target: 5'- cGUCG-GGUGGGGaacgaucuguGGUCACuGCGGUaacaCCg -3' miRNA: 3'- -CAGCuCUACCCU----------UCAGUGcUGCCA----GG- -5' |
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16463 | 5' | -53.3 | NC_004084.1 | + | 41611 | 0.67 | 0.812063 |
Target: 5'- cGUCGAGGac-GAAcgcGagGCGACGGUCCg -3' miRNA: 3'- -CAGCUCUaccCUU---CagUGCUGCCAGG- -5' |
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16463 | 5' | -53.3 | NC_004084.1 | + | 22453 | 0.67 | 0.821337 |
Target: 5'- aUCGAGucGGGAcuGGUCACGGCcG-CCg -3' miRNA: 3'- cAGCUCuaCCCU--UCAGUGCUGcCaGG- -5' |
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16463 | 5' | -53.3 | NC_004084.1 | + | 35269 | 0.69 | 0.689249 |
Target: 5'- -cCGAGG-GGGAAGUCcuCGGCgcuggggaGGUCCu -3' miRNA: 3'- caGCUCUaCCCUUCAGu-GCUG--------CCAGG- -5' |
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16463 | 5' | -53.3 | NC_004084.1 | + | 32684 | 0.69 | 0.710787 |
Target: 5'- uUCGAGgcGGcGAAGUC-UGACGGUa- -3' miRNA: 3'- cAGCUCuaCC-CUUCAGuGCUGCCAgg -5' |
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16463 | 5' | -53.3 | NC_004084.1 | + | 18112 | 0.69 | 0.721447 |
Target: 5'- gGUCGAGGUcGGGGAuGUC-CGGCucGGcCCg -3' miRNA: 3'- -CAGCUCUA-CCCUU-CAGuGCUG--CCaGG- -5' |
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16463 | 5' | -53.3 | NC_004084.1 | + | 19810 | 0.67 | 0.792964 |
Target: 5'- -------cGGGGAGUCguuccGCGACGGUCUc -3' miRNA: 3'- cagcucuaCCCUUCAG-----UGCUGCCAGG- -5' |
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16463 | 5' | -53.3 | NC_004084.1 | + | 49645 | 0.67 | 0.812063 |
Target: 5'- cGUCGAGAUGG--AGUCGgcguacCGGCugaagccggguGGUCCg -3' miRNA: 3'- -CAGCUCUACCcuUCAGU------GCUG-----------CCAGG- -5' |
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16463 | 5' | -53.3 | NC_004084.1 | + | 18978 | 0.67 | 0.821337 |
Target: 5'- aGUCGgccGGcgGGGAAGUCGua--GGUCCc -3' miRNA: 3'- -CAGC---UCuaCCCUUCAGUgcugCCAGG- -5' |
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16463 | 5' | -53.3 | NC_004084.1 | + | 22807 | 0.66 | 0.839281 |
Target: 5'- cGUCGAGA-GGGc-GUCACGGauCGaUCCg -3' miRNA: 3'- -CAGCUCUaCCCuuCAGUGCU--GCcAGG- -5' |
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16463 | 5' | -53.3 | NC_004084.1 | + | 52487 | 0.71 | 0.601756 |
Target: 5'- cGUCGGGAUagacGAAGUCcaguUGAUGGUCCa -3' miRNA: 3'- -CAGCUCUAcc--CUUCAGu---GCUGCCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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