miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16464 3' -60.1 NC_004084.1 + 16094 0.66 0.503141
Target:  5'- gGGCGA-GACCgaGCGCCUcGCagaUGAGu -3'
miRNA:   3'- aCCGCUgCUGGg-CGCGGAuCG---ACUCc -5'
16464 3' -60.1 NC_004084.1 + 44847 0.66 0.497165
Target:  5'- aGGuCGGauCGGCCCGCGaCUuccaggaggacgucGCUGAGGa -3'
miRNA:   3'- aCC-GCU--GCUGGGCGCgGAu-------------CGACUCC- -5'
16464 3' -60.1 NC_004084.1 + 12228 0.66 0.493198
Target:  5'- cGaCGACGAUCuCGcCGCCUaccAGCUGGGc -3'
miRNA:   3'- aCcGCUGCUGG-GC-GCGGA---UCGACUCc -5'
16464 3' -60.1 NC_004084.1 + 18461 0.66 0.47359
Target:  5'- cGaGCGAUGACCCGC-UCgAGUUcGAGGu -3'
miRNA:   3'- aC-CGCUGCUGGGCGcGGaUCGA-CUCC- -5'
16464 3' -60.1 NC_004084.1 + 43839 0.66 0.463933
Target:  5'- gGGCG-CGAgacaUCCGCGaCgccGCUGAGGa -3'
miRNA:   3'- aCCGCuGCU----GGGCGCgGau-CGACUCC- -5'
16464 3' -60.1 NC_004084.1 + 13831 0.66 0.462974
Target:  5'- cGGCGAUGACCUcugcgugGCaGCCaGGCccgucaucguUGAGGc -3'
miRNA:   3'- aCCGCUGCUGGG-------CG-CGGaUCG----------ACUCC- -5'
16464 3' -60.1 NC_004084.1 + 3544 0.67 0.426382
Target:  5'- cGGCGACGACUCGaa-CUGGC--AGGu -3'
miRNA:   3'- aCCGCUGCUGGGCgcgGAUCGacUCC- -5'
16464 3' -60.1 NC_004084.1 + 36248 0.67 0.426382
Target:  5'- gGGCGcuGCGAUCCcucCGCC-AGCUGGGc -3'
miRNA:   3'- aCCGC--UGCUGGGc--GCGGaUCGACUCc -5'
16464 3' -60.1 NC_004084.1 + 17331 0.67 0.41728
Target:  5'- cGGCGACGGCCCGCaucGUCUcGUcGAc- -3'
miRNA:   3'- aCCGCUGCUGGGCG---CGGAuCGaCUcc -5'
16464 3' -60.1 NC_004084.1 + 21395 0.67 0.41728
Target:  5'- aGGCGGCGAUgaCCG-GCCUcGaUGAGGu -3'
miRNA:   3'- aCCGCUGCUG--GGCgCGGAuCgACUCC- -5'
16464 3' -60.1 NC_004084.1 + 2908 0.67 0.416376
Target:  5'- aGGCGaucgaacGCGACCCGaagCUGGgaGAGGa -3'
miRNA:   3'- aCCGC-------UGCUGGGCgcgGAUCgaCUCC- -5'
16464 3' -60.1 NC_004084.1 + 1740 0.68 0.399435
Target:  5'- cGGUGACcgaGACCCGcCGCCgaaguaccgAGC-GGGGc -3'
miRNA:   3'- aCCGCUG---CUGGGC-GCGGa--------UCGaCUCC- -5'
16464 3' -60.1 NC_004084.1 + 1824 0.68 0.357019
Target:  5'- cGGCGACGACgCCGCGUUcacGgUGuGGc -3'
miRNA:   3'- aCCGCUGCUG-GGCGCGGau-CgACuCC- -5'
16464 3' -60.1 NC_004084.1 + 31398 0.69 0.348924
Target:  5'- cGGCGAaGGCCgGUGUCguagaggAGCgUGAGGa -3'
miRNA:   3'- aCCGCUgCUGGgCGCGGa------UCG-ACUCC- -5'
16464 3' -60.1 NC_004084.1 + 5962 0.69 0.340961
Target:  5'- aGGCGAUGuacaACCCaGCGCCggaGGCgGAGu -3'
miRNA:   3'- aCCGCUGC----UGGG-CGCGGa--UCGaCUCc -5'
16464 3' -60.1 NC_004084.1 + 39120 0.7 0.303136
Target:  5'- aGGCGGUGACCCGgagaGCCUgaaguauaaAGCUcgcGAGGg -3'
miRNA:   3'- aCCGCUGCUGGGCg---CGGA---------UCGA---CUCC- -5'
16464 3' -60.1 NC_004084.1 + 22720 0.72 0.214578
Target:  5'- cGGCGAgCGACCCGacgaagucCGCCcAGCgguacGAGGa -3'
miRNA:   3'- aCCGCU-GCUGGGC--------GCGGaUCGa----CUCC- -5'
16464 3' -60.1 NC_004084.1 + 31166 0.72 0.209186
Target:  5'- cGGCGAC-AUCCGgGUacucauCUGGCUGGGGa -3'
miRNA:   3'- aCCGCUGcUGGGCgCG------GAUCGACUCC- -5'
16464 3' -60.1 NC_004084.1 + 44910 1.09 0.000409
Target:  5'- cGGCGACGACCCGCGCCUAGCUGAGGu -3'
miRNA:   3'- aCCGCUGCUGGGCGCGGAUCGACUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.