Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16464 | 3' | -60.1 | NC_004084.1 | + | 13831 | 0.66 | 0.462974 |
Target: 5'- cGGCGAUGACCUcugcgugGCaGCCaGGCccgucaucguUGAGGc -3' miRNA: 3'- aCCGCUGCUGGG-------CG-CGGaUCG----------ACUCC- -5' |
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16464 | 3' | -60.1 | NC_004084.1 | + | 16094 | 0.66 | 0.503141 |
Target: 5'- gGGCGA-GACCgaGCGCCUcGCagaUGAGu -3' miRNA: 3'- aCCGCUgCUGGg-CGCGGAuCG---ACUCc -5' |
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16464 | 3' | -60.1 | NC_004084.1 | + | 44847 | 0.66 | 0.497165 |
Target: 5'- aGGuCGGauCGGCCCGCGaCUuccaggaggacgucGCUGAGGa -3' miRNA: 3'- aCC-GCU--GCUGGGCGCgGAu-------------CGACUCC- -5' |
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16464 | 3' | -60.1 | NC_004084.1 | + | 12228 | 0.66 | 0.493198 |
Target: 5'- cGaCGACGAUCuCGcCGCCUaccAGCUGGGc -3' miRNA: 3'- aCcGCUGCUGG-GC-GCGGA---UCGACUCc -5' |
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16464 | 3' | -60.1 | NC_004084.1 | + | 18461 | 0.66 | 0.47359 |
Target: 5'- cGaGCGAUGACCCGC-UCgAGUUcGAGGu -3' miRNA: 3'- aC-CGCUGCUGGGCGcGGaUCGA-CUCC- -5' |
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16464 | 3' | -60.1 | NC_004084.1 | + | 43839 | 0.66 | 0.463933 |
Target: 5'- gGGCG-CGAgacaUCCGCGaCgccGCUGAGGa -3' miRNA: 3'- aCCGCuGCU----GGGCGCgGau-CGACUCC- -5' |
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16464 | 3' | -60.1 | NC_004084.1 | + | 17331 | 0.67 | 0.41728 |
Target: 5'- cGGCGACGGCCCGCaucGUCUcGUcGAc- -3' miRNA: 3'- aCCGCUGCUGGGCG---CGGAuCGaCUcc -5' |
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16464 | 3' | -60.1 | NC_004084.1 | + | 3544 | 0.67 | 0.426382 |
Target: 5'- cGGCGACGACUCGaa-CUGGC--AGGu -3' miRNA: 3'- aCCGCUGCUGGGCgcgGAUCGacUCC- -5' |
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16464 | 3' | -60.1 | NC_004084.1 | + | 36248 | 0.67 | 0.426382 |
Target: 5'- gGGCGcuGCGAUCCcucCGCC-AGCUGGGc -3' miRNA: 3'- aCCGC--UGCUGGGc--GCGGaUCGACUCc -5' |
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16464 | 3' | -60.1 | NC_004084.1 | + | 21395 | 0.67 | 0.41728 |
Target: 5'- aGGCGGCGAUgaCCG-GCCUcGaUGAGGu -3' miRNA: 3'- aCCGCUGCUG--GGCgCGGAuCgACUCC- -5' |
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16464 | 3' | -60.1 | NC_004084.1 | + | 2908 | 0.67 | 0.416376 |
Target: 5'- aGGCGaucgaacGCGACCCGaagCUGGgaGAGGa -3' miRNA: 3'- aCCGC-------UGCUGGGCgcgGAUCgaCUCC- -5' |
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16464 | 3' | -60.1 | NC_004084.1 | + | 1740 | 0.68 | 0.399435 |
Target: 5'- cGGUGACcgaGACCCGcCGCCgaaguaccgAGC-GGGGc -3' miRNA: 3'- aCCGCUG---CUGGGC-GCGGa--------UCGaCUCC- -5' |
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16464 | 3' | -60.1 | NC_004084.1 | + | 1824 | 0.68 | 0.357019 |
Target: 5'- cGGCGACGACgCCGCGUUcacGgUGuGGc -3' miRNA: 3'- aCCGCUGCUG-GGCGCGGau-CgACuCC- -5' |
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16464 | 3' | -60.1 | NC_004084.1 | + | 31398 | 0.69 | 0.348924 |
Target: 5'- cGGCGAaGGCCgGUGUCguagaggAGCgUGAGGa -3' miRNA: 3'- aCCGCUgCUGGgCGCGGa------UCG-ACUCC- -5' |
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16464 | 3' | -60.1 | NC_004084.1 | + | 5962 | 0.69 | 0.340961 |
Target: 5'- aGGCGAUGuacaACCCaGCGCCggaGGCgGAGu -3' miRNA: 3'- aCCGCUGC----UGGG-CGCGGa--UCGaCUCc -5' |
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16464 | 3' | -60.1 | NC_004084.1 | + | 39120 | 0.7 | 0.303136 |
Target: 5'- aGGCGGUGACCCGgagaGCCUgaaguauaaAGCUcgcGAGGg -3' miRNA: 3'- aCCGCUGCUGGGCg---CGGA---------UCGA---CUCC- -5' |
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16464 | 3' | -60.1 | NC_004084.1 | + | 22720 | 0.72 | 0.214578 |
Target: 5'- cGGCGAgCGACCCGacgaagucCGCCcAGCgguacGAGGa -3' miRNA: 3'- aCCGCU-GCUGGGC--------GCGGaUCGa----CUCC- -5' |
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16464 | 3' | -60.1 | NC_004084.1 | + | 31166 | 0.72 | 0.209186 |
Target: 5'- cGGCGAC-AUCCGgGUacucauCUGGCUGGGGa -3' miRNA: 3'- aCCGCUGcUGGGCgCG------GAUCGACUCC- -5' |
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16464 | 3' | -60.1 | NC_004084.1 | + | 44910 | 1.09 | 0.000409 |
Target: 5'- cGGCGACGACCCGCGCCUAGCUGAGGu -3' miRNA: 3'- aCCGCUGCUGGGCGCGGAUCGACUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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