miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16464 5' -53.3 NC_004084.1 + 20460 0.66 0.870006
Target:  5'- --aGUCGGCGAc--CGGCGaagUCGUCu -3'
miRNA:   3'- aagCAGCUGCUcuuGCCGCa--AGCAGc -5'
16464 5' -53.3 NC_004084.1 + 18693 0.66 0.861963
Target:  5'- cUCGUCauccuCGucGACGGCG-UCGUCGc -3'
miRNA:   3'- aAGCAGcu---GCucUUGCCGCaAGCAGC- -5'
16464 5' -53.3 NC_004084.1 + 51260 0.66 0.861963
Target:  5'- cUUCGUCaGCGGcGAACGcuGUGUcgUCGUCGa -3'
miRNA:   3'- -AAGCAGcUGCU-CUUGC--CGCA--AGCAGC- -5'
16464 5' -53.3 NC_004084.1 + 20123 0.66 0.853682
Target:  5'- cUCGUCGACG-GAACGuCGgUCGgauUCGa -3'
miRNA:   3'- aAGCAGCUGCuCUUGCcGCaAGC---AGC- -5'
16464 5' -53.3 NC_004084.1 + 21717 0.66 0.853682
Target:  5'- -cCGUCGACGAGAuCcGCGa-CGUCa -3'
miRNA:   3'- aaGCAGCUGCUCUuGcCGCaaGCAGc -5'
16464 5' -53.3 NC_004084.1 + 57669 0.66 0.853682
Target:  5'- cUUCGUCGAacgacuauaCGAG-GCGGCGUauaUCGagGg -3'
miRNA:   3'- -AAGCAGCU---------GCUCuUGCCGCA---AGCagC- -5'
16464 5' -53.3 NC_004084.1 + 49414 0.66 0.852841
Target:  5'- -aCG-CGGuggucaucaaaccCGAGAACGGCGgucuggUCGUCa -3'
miRNA:   3'- aaGCaGCU-------------GCUCUUGCCGCa-----AGCAGc -5'
16464 5' -53.3 NC_004084.1 + 21989 0.66 0.845169
Target:  5'- -aUGUCGuACaGGucuGCGGCGaUCGUCGa -3'
miRNA:   3'- aaGCAGC-UGcUCu--UGCCGCaAGCAGC- -5'
16464 5' -53.3 NC_004084.1 + 37232 0.66 0.845169
Target:  5'- -cCGg-GGCGAGAAgaaccgcguccCGGCGcUCGUCGa -3'
miRNA:   3'- aaGCagCUGCUCUU-----------GCCGCaAGCAGC- -5'
16464 5' -53.3 NC_004084.1 + 20845 0.66 0.836433
Target:  5'- cUCGcUCGcCGAGggUGGCa--CGUCGa -3'
miRNA:   3'- aAGC-AGCuGCUCuuGCCGcaaGCAGC- -5'
16464 5' -53.3 NC_004084.1 + 52928 0.66 0.836433
Target:  5'- cUCGUCGacuGCGAcGAucuggccguCGGCG-UCGUCGu -3'
miRNA:   3'- aAGCAGC---UGCU-CUu--------GCCGCaAGCAGC- -5'
16464 5' -53.3 NC_004084.1 + 29430 0.66 0.83377
Target:  5'- -cCGUCGACGGcGAgcuucaccgcgaacGCGGCGUgggCG-CGa -3'
miRNA:   3'- aaGCAGCUGCU-CU--------------UGCCGCAa--GCaGC- -5'
16464 5' -53.3 NC_004084.1 + 35673 0.66 0.832878
Target:  5'- cUCGUCGAUGuccucguaccgcuGGGCGGacUUCGUCGg -3'
miRNA:   3'- aAGCAGCUGCu------------CUUGCCgcAAGCAGC- -5'
16464 5' -53.3 NC_004084.1 + 3461 0.66 0.827483
Target:  5'- aUCG-CGAgCGccgggggaauacGGAACGGCGUUCGacgUCGa -3'
miRNA:   3'- aAGCaGCU-GC------------UCUUGCCGCAAGC---AGC- -5'
16464 5' -53.3 NC_004084.1 + 16648 0.66 0.826577
Target:  5'- gUCGUCGACGucguccgGGAGguccucgucgcCGGCGU-CGUCc -3'
miRNA:   3'- aAGCAGCUGC-------UCUU-----------GCCGCAaGCAGc -5'
16464 5' -53.3 NC_004084.1 + 685 0.66 0.826577
Target:  5'- cUUCGUCGACGuccucGAGCGgugcacgcacuguGCGUucaUCGUCu -3'
miRNA:   3'- -AAGCAGCUGCu----CUUGC-------------CGCA---AGCAGc -5'
16464 5' -53.3 NC_004084.1 + 17946 0.67 0.818329
Target:  5'- gUCGUCGcguuCGAGGcCGuGUGgacgUCGUCGg -3'
miRNA:   3'- aAGCAGCu---GCUCUuGC-CGCa---AGCAGC- -5'
16464 5' -53.3 NC_004084.1 + 5677 0.67 0.818329
Target:  5'- -cCGUCGACGAGA-CGGUGaagauacUCGaCGa -3'
miRNA:   3'- aaGCAGCUGCUCUuGCCGCa------AGCaGC- -5'
16464 5' -53.3 NC_004084.1 + 17981 0.67 0.80898
Target:  5'- aUCGUCGGCGcGcuguCGaGCGUUCGUg- -3'
miRNA:   3'- aAGCAGCUGCuCuu--GC-CGCAAGCAgc -5'
16464 5' -53.3 NC_004084.1 + 28654 0.67 0.80898
Target:  5'- gUCG-CGAUGcAGGACGGUcaUCGUCu -3'
miRNA:   3'- aAGCaGCUGC-UCUUGCCGcaAGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.