miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16465 5' -57 NC_004084.1 + 56200 0.66 0.623665
Target:  5'- --aGGCAGCGAuguagUCGGGCgugugGCCgUgCAu -3'
miRNA:   3'- augCCGUUGCU-----AGCCCGa----CGGaAgGU- -5'
16465 5' -57 NC_004084.1 + 43654 0.66 0.623665
Target:  5'- --aGGCA-CGAaCGGGCggGCCUaCCGc -3'
miRNA:   3'- augCCGUuGCUaGCCCGa-CGGAaGGU- -5'
16465 5' -57 NC_004084.1 + 24359 0.66 0.576692
Target:  5'- --aGGCAaccGCGGUCGgugauaccagcaccGGCUGCUUUCUg -3'
miRNA:   3'- augCCGU---UGCUAGC--------------CCGACGGAAGGu -5'
16465 5' -57 NC_004084.1 + 11931 0.67 0.569108
Target:  5'- --aGGCAuCGGUCGGGaauccaaUGCCUcucgCCAc -3'
miRNA:   3'- augCCGUuGCUAGCCCg------ACGGAa---GGU- -5'
16465 5' -57 NC_004084.1 + 24049 0.67 0.558316
Target:  5'- gACGGCGAUGGaCGcGGUUGCggcgUCCAu -3'
miRNA:   3'- aUGCCGUUGCUaGC-CCGACGga--AGGU- -5'
16465 5' -57 NC_004084.1 + 18313 0.67 0.536915
Target:  5'- --gGGCGACGAgauUCGGuuguUUGCCUUCCc -3'
miRNA:   3'- augCCGUUGCU---AGCCc---GACGGAAGGu -5'
16465 5' -57 NC_004084.1 + 49078 0.68 0.458668
Target:  5'- gACGuGCGACGGUCGGGagaggucucgcgugaCUGUCU-CCGg -3'
miRNA:   3'- aUGC-CGUUGCUAGCCC---------------GACGGAaGGU- -5'
16465 5' -57 NC_004084.1 + 16558 0.69 0.435227
Target:  5'- cGCGGCucucgggcCGAUCGGuGCcGCUUUCCu -3'
miRNA:   3'- aUGCCGuu------GCUAGCC-CGaCGGAAGGu -5'
16465 5' -57 NC_004084.1 + 51924 0.69 0.435227
Target:  5'- cACGGCAcCG-UCGGGCgccGUCUUCUc -3'
miRNA:   3'- aUGCCGUuGCuAGCCCGa--CGGAAGGu -5'
16465 5' -57 NC_004084.1 + 51389 0.69 0.435227
Target:  5'- cUACGGCAACGAgauGGCgGCCgacgCCGu -3'
miRNA:   3'- -AUGCCGUUGCUagcCCGaCGGaa--GGU- -5'
16465 5' -57 NC_004084.1 + 53260 0.71 0.305991
Target:  5'- gACGGCGACGAgaUCGGGCcggGCgacgUCCu -3'
miRNA:   3'- aUGCCGUUGCU--AGCCCGa--CGga--AGGu -5'
16465 5' -57 NC_004084.1 + 29342 0.73 0.250044
Target:  5'- cGCGGCGACGAcgcccccgagCGGGCggucgcgGCCUgCCAg -3'
miRNA:   3'- aUGCCGUUGCUa---------GCCCGa------CGGAaGGU- -5'
16465 5' -57 NC_004084.1 + 29387 0.78 0.117363
Target:  5'- aACGaGCAACGGUCGGGCgGCCacUCCu -3'
miRNA:   3'- aUGC-CGUUGCUAGCCCGaCGGa-AGGu -5'
16465 5' -57 NC_004084.1 + 45188 1.07 0.000883
Target:  5'- gUACGGCAACGAUCGGGCUGCCUUCCAg -3'
miRNA:   3'- -AUGCCGUUGCUAGCCCGACGGAAGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.