miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16466 3' -54.5 NC_004084.1 + 7099 0.66 0.814946
Target:  5'- gGGCGCacUCGAucgcCUCGgUCGCcgucuuGGUGAUGa -3'
miRNA:   3'- -CCGCG--AGCU----GAGCaAGUGc-----CCACUAC- -5'
16466 3' -54.5 NC_004084.1 + 22643 0.66 0.814946
Target:  5'- cGGCGCcucCGGCUCGaaccUCuACGGGaucgaGAUGg -3'
miRNA:   3'- -CCGCGa--GCUGAGCa---AG-UGCCCa----CUAC- -5'
16466 3' -54.5 NC_004084.1 + 28274 0.66 0.786369
Target:  5'- cGGC-UUCGACUCGUggACGGGa---- -3'
miRNA:   3'- -CCGcGAGCUGAGCAagUGCCCacuac -5'
16466 3' -54.5 NC_004084.1 + 15014 0.66 0.780474
Target:  5'- uGCGCUgCGGCUCGUcgaGCGucgacggccacucgaGGUGGUGc -3'
miRNA:   3'- cCGCGA-GCUGAGCAag-UGC---------------CCACUAC- -5'
16466 3' -54.5 NC_004084.1 + 21605 0.67 0.714691
Target:  5'- cGGCGUUCGucgacGCUCGUcgagaacgaagUCGaGGGUGAa- -3'
miRNA:   3'- -CCGCGAGC-----UGAGCA-----------AGUgCCCACUac -5'
16466 3' -54.5 NC_004084.1 + 1327 0.68 0.693324
Target:  5'- cGGCGCUCGACguaggaGUacUCcguCGGGUGu-- -3'
miRNA:   3'- -CCGCGAGCUGag----CA--AGu--GCCCACuac -5'
16466 3' -54.5 NC_004084.1 + 22575 0.68 0.649979
Target:  5'- cGGCGUUCGGCcgaUCGgcgUCugGGG-GGg- -3'
miRNA:   3'- -CCGCGAGCUG---AGCa--AGugCCCaCUac -5'
16466 3' -54.5 NC_004084.1 + 31619 0.69 0.637987
Target:  5'- cGCGCUCGAUUCGcUCugGGagagcgacguugcGUGggGg -3'
miRNA:   3'- cCGCGAGCUGAGCaAGugCC-------------CACuaC- -5'
16466 3' -54.5 NC_004084.1 + 3487 0.69 0.617264
Target:  5'- cGGCGUUCGACgucgacaGUgcuggccagcaUCAUGGaGUGGUGa -3'
miRNA:   3'- -CCGCGAGCUGag-----CA-----------AGUGCC-CACUAC- -5'
16466 3' -54.5 NC_004084.1 + 49974 0.69 0.606372
Target:  5'- cGGCGaCUCGuCUCGcggaCGCuGGUGAUGc -3'
miRNA:   3'- -CCGC-GAGCuGAGCaa--GUGcCCACUAC- -5'
16466 3' -54.5 NC_004084.1 + 1824 0.71 0.531203
Target:  5'- cGGCGa-CGACgccgCGUUCACGGuGUGGc- -3'
miRNA:   3'- -CCGCgaGCUGa---GCAAGUGCC-CACUac -5'
16466 3' -54.5 NC_004084.1 + 29219 0.74 0.36721
Target:  5'- aGCGCgUCGACgUUGUUCGCGGGcGAg- -3'
miRNA:   3'- cCGCG-AGCUG-AGCAAGUGCCCaCUac -5'
16466 3' -54.5 NC_004084.1 + 38790 0.74 0.358692
Target:  5'- gGGCGCUCGuuCUCGauaagUACGGGUG-UGa -3'
miRNA:   3'- -CCGCGAGCu-GAGCaa---GUGCCCACuAC- -5'
16466 3' -54.5 NC_004084.1 + 45419 1 0.006766
Target:  5'- gGGC-CUCGACUCGUUCACGGGUGAUGg -3'
miRNA:   3'- -CCGcGAGCUGAGCAAGUGCCCACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.