Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16466 | 3' | -54.5 | NC_004084.1 | + | 7099 | 0.66 | 0.814946 |
Target: 5'- gGGCGCacUCGAucgcCUCGgUCGCcgucuuGGUGAUGa -3' miRNA: 3'- -CCGCG--AGCU----GAGCaAGUGc-----CCACUAC- -5' |
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16466 | 3' | -54.5 | NC_004084.1 | + | 28274 | 0.66 | 0.786369 |
Target: 5'- cGGC-UUCGACUCGUggACGGGa---- -3' miRNA: 3'- -CCGcGAGCUGAGCAagUGCCCacuac -5' |
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16466 | 3' | -54.5 | NC_004084.1 | + | 22643 | 0.66 | 0.814946 |
Target: 5'- cGGCGCcucCGGCUCGaaccUCuACGGGaucgaGAUGg -3' miRNA: 3'- -CCGCGa--GCUGAGCa---AG-UGCCCa----CUAC- -5' |
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16466 | 3' | -54.5 | NC_004084.1 | + | 15014 | 0.66 | 0.780474 |
Target: 5'- uGCGCUgCGGCUCGUcgaGCGucgacggccacucgaGGUGGUGc -3' miRNA: 3'- cCGCGA-GCUGAGCAag-UGC---------------CCACUAC- -5' |
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16466 | 3' | -54.5 | NC_004084.1 | + | 21605 | 0.67 | 0.714691 |
Target: 5'- cGGCGUUCGucgacGCUCGUcgagaacgaagUCGaGGGUGAa- -3' miRNA: 3'- -CCGCGAGC-----UGAGCA-----------AGUgCCCACUac -5' |
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16466 | 3' | -54.5 | NC_004084.1 | + | 22575 | 0.68 | 0.649979 |
Target: 5'- cGGCGUUCGGCcgaUCGgcgUCugGGG-GGg- -3' miRNA: 3'- -CCGCGAGCUG---AGCa--AGugCCCaCUac -5' |
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16466 | 3' | -54.5 | NC_004084.1 | + | 1327 | 0.68 | 0.693324 |
Target: 5'- cGGCGCUCGACguaggaGUacUCcguCGGGUGu-- -3' miRNA: 3'- -CCGCGAGCUGag----CA--AGu--GCCCACuac -5' |
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16466 | 3' | -54.5 | NC_004084.1 | + | 31619 | 0.69 | 0.637987 |
Target: 5'- cGCGCUCGAUUCGcUCugGGagagcgacguugcGUGggGg -3' miRNA: 3'- cCGCGAGCUGAGCaAGugCC-------------CACuaC- -5' |
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16466 | 3' | -54.5 | NC_004084.1 | + | 3487 | 0.69 | 0.617264 |
Target: 5'- cGGCGUUCGACgucgacaGUgcuggccagcaUCAUGGaGUGGUGa -3' miRNA: 3'- -CCGCGAGCUGag-----CA-----------AGUGCC-CACUAC- -5' |
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16466 | 3' | -54.5 | NC_004084.1 | + | 49974 | 0.69 | 0.606372 |
Target: 5'- cGGCGaCUCGuCUCGcggaCGCuGGUGAUGc -3' miRNA: 3'- -CCGC-GAGCuGAGCaa--GUGcCCACUAC- -5' |
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16466 | 3' | -54.5 | NC_004084.1 | + | 1824 | 0.71 | 0.531203 |
Target: 5'- cGGCGa-CGACgccgCGUUCACGGuGUGGc- -3' miRNA: 3'- -CCGCgaGCUGa---GCAAGUGCC-CACUac -5' |
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16466 | 3' | -54.5 | NC_004084.1 | + | 29219 | 0.74 | 0.36721 |
Target: 5'- aGCGCgUCGACgUUGUUCGCGGGcGAg- -3' miRNA: 3'- cCGCG-AGCUG-AGCAAGUGCCCaCUac -5' |
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16466 | 3' | -54.5 | NC_004084.1 | + | 38790 | 0.74 | 0.358692 |
Target: 5'- gGGCGCUCGuuCUCGauaagUACGGGUG-UGa -3' miRNA: 3'- -CCGCGAGCu-GAGCaa---GUGCCCACuAC- -5' |
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16466 | 3' | -54.5 | NC_004084.1 | + | 45419 | 1 | 0.006766 |
Target: 5'- gGGC-CUCGACUCGUUCACGGGUGAUGg -3' miRNA: 3'- -CCGcGAGCUGAGCAAGUGCCCACUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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