miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16466 5' -59.7 NC_004084.1 + 35998 0.68 0.419431
Target:  5'- ---uCCGaCCGCGucGUCGGAGCCGAg -3'
miRNA:   3'- cugcGGCgGGCGCucUAGCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 18148 0.68 0.419431
Target:  5'- cGACGUCGCCgGCGAGuggacgaUGGAGaUCGAg -3'
miRNA:   3'- -CUGCGGCGGgCGCUCua-----GCUUC-GGCU- -5'
16466 5' -59.7 NC_004084.1 + 29067 0.68 0.419431
Target:  5'- cGCGaCCGCCCGCucggGGGcGUCGucGCCGc -3'
miRNA:   3'- cUGC-GGCGGGCG----CUC-UAGCuuCGGCu -5'
16466 5' -59.7 NC_004084.1 + 6208 0.68 0.40148
Target:  5'- cGAUGauCUGCCCGaCGAGGUCGAGauuCCGGa -3'
miRNA:   3'- -CUGC--GGCGGGC-GCUCUAGCUUc--GGCU- -5'
16466 5' -59.7 NC_004084.1 + 9889 0.68 0.40148
Target:  5'- aACcCUGCCCGggagaaccCGAGAUCGAAcccGCCGAu -3'
miRNA:   3'- cUGcGGCGGGC--------GCUCUAGCUU---CGGCU- -5'
16466 5' -59.7 NC_004084.1 + 30231 0.68 0.40148
Target:  5'- aGGCGauGUCCGCGGcGAcgUCGAacaGGCCGAg -3'
miRNA:   3'- -CUGCggCGGGCGCU-CU--AGCU---UCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 1213 0.68 0.40148
Target:  5'- aACGCUGgCUggcucggcgGCGGGAUCGAGGgCGAu -3'
miRNA:   3'- cUGCGGCgGG---------CGCUCUAGCUUCgGCU- -5'
16466 5' -59.7 NC_004084.1 + 9501 0.68 0.384025
Target:  5'- cGGCGCCGaCCG-GAaGUCGuGGCCGAc -3'
miRNA:   3'- -CUGCGGCgGGCgCUcUAGCuUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 5151 0.68 0.384025
Target:  5'- gGACGUCGCCCGgccCGAucUCGucGCCGu -3'
miRNA:   3'- -CUGCGGCGGGC---GCUcuAGCuuCGGCu -5'
16466 5' -59.7 NC_004084.1 + 7432 0.68 0.375488
Target:  5'- cGAUGCCGacggUgGCGAGAccUCGGAGuCCGAc -3'
miRNA:   3'- -CUGCGGCg---GgCGCUCU--AGCUUC-GGCU- -5'
16466 5' -59.7 NC_004084.1 + 11932 0.68 0.375488
Target:  5'- cGACGUCGCgaCCaGCGAGGacUCGAucgAGCUGAc -3'
miRNA:   3'- -CUGCGGCG--GG-CGCUCU--AGCU---UCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 32421 0.69 0.366247
Target:  5'- cGACGa-GCUCGCacucgucgcgaacGAGGUCGAGGUCGAu -3'
miRNA:   3'- -CUGCggCGGGCG-------------CUCUAGCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 34302 0.69 0.357983
Target:  5'- aGACGCCGCCCaaaGAGAggaaacagcguagUCaGAGUCGAa -3'
miRNA:   3'- -CUGCGGCGGGcg-CUCU-------------AGcUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 34990 0.69 0.350658
Target:  5'- -uCGCCGCCUGCGuGucagCGAucAGCUGGg -3'
miRNA:   3'- cuGCGGCGGGCGCuCua--GCU--UCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 51325 0.69 0.342644
Target:  5'- aGGCGaucgagugCGCCCGCGAGAUCuucGUCGAc -3'
miRNA:   3'- -CUGCg-------GCGGGCGCUCUAGcuuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 40432 0.69 0.334764
Target:  5'- --aGCUGUU--CGAGAUCGAGGCCGAg -3'
miRNA:   3'- cugCGGCGGgcGCUCUAGCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 21605 0.69 0.333983
Target:  5'- cGGCGUucgucgaCGCUCGuCGAGAaCGAAGUCGAg -3'
miRNA:   3'- -CUGCG-------GCGGGC-GCUCUaGCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 8434 0.69 0.327017
Target:  5'- uACGCaucaccagCGUCCGCGAGA-CGAGucGCCGAg -3'
miRNA:   3'- cUGCG--------GCGGGCGCUCUaGCUU--CGGCU- -5'
16466 5' -59.7 NC_004084.1 + 35429 0.7 0.319403
Target:  5'- cGAUcUCGCUCGCGAGGUCGAccaggacucGGUCGGc -3'
miRNA:   3'- -CUGcGGCGGGCGCUCUAGCU---------UCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 51185 0.7 0.319403
Target:  5'- cGCGCCGaUCGuCGAGGUCGgcGCUGGc -3'
miRNA:   3'- cUGCGGCgGGC-GCUCUAGCuuCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.