Results 21 - 40 of 58 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 31454 | 0.67 | 0.70826 |
Target: 5'- uGUCGACcaGCGGgcaAUGGauGCGGUGAGc -3' miRNA: 3'- gCAGCUG--CGCUag-UACC--UGCCGCUCu -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 17733 | 0.67 | 0.70826 |
Target: 5'- aGUCauCGUGAUCAcucaguugcucUGGauccGCGGCGAGAg -3' miRNA: 3'- gCAGcuGCGCUAGU-----------ACC----UGCCGCUCU- -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 47360 | 0.67 | 0.705091 |
Target: 5'- uCGUCGGCGgccgccccuucgucCGcGUCGUcGACGGCGAGc -3' miRNA: 3'- -GCAGCUGC--------------GC-UAGUAcCUGCCGCUCu -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 54465 | 0.67 | 0.697674 |
Target: 5'- uGUCGcCGCgGAUCGUcuucACGGCGGGGa -3' miRNA: 3'- gCAGCuGCG-CUAGUAcc--UGCCGCUCU- -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 48392 | 0.67 | 0.697674 |
Target: 5'- cCGUCGACGCGGcaUCGUGGcCGccaucucgGAGAu -3' miRNA: 3'- -GCAGCUGCGCU--AGUACCuGCcg------CUCU- -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 46392 | 0.67 | 0.697674 |
Target: 5'- gGUCGAauCGaCGAUCGgcGACGGCGAa- -3' miRNA: 3'- gCAGCU--GC-GCUAGUacCUGCCGCUcu -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 31133 | 0.67 | 0.697674 |
Target: 5'- gCGgCGcCGCGAUCGUcagcgguucGGACcGCGAGAu -3' miRNA: 3'- -GCaGCuGCGCUAGUA---------CCUGcCGCUCU- -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 29210 | 0.67 | 0.691292 |
Target: 5'- aCGUCGACGCGcUC-UGGaACaucgacgccgagcagGGCGAGu -3' miRNA: 3'- -GCAGCUGCGCuAGuACC-UG---------------CCGCUCu -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 39235 | 0.67 | 0.687026 |
Target: 5'- aCGUCGucuACGacAUCGgcaaGGGCGGCGGGAa -3' miRNA: 3'- -GCAGC---UGCgcUAGUa---CCUGCCGCUCU- -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 52588 | 0.68 | 0.665588 |
Target: 5'- gCGgCGGCGUGGUCc-GGugGGuCGAGGc -3' miRNA: 3'- -GCaGCUGCGCUAGuaCCugCC-GCUCU- -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 16434 | 0.68 | 0.65913 |
Target: 5'- gCGUCGAUGUGGgcaucgguuacgggCAUGGGC-GCGAGc -3' miRNA: 3'- -GCAGCUGCGCUa-------------GUACCUGcCGCUCu -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 41311 | 0.68 | 0.64403 |
Target: 5'- aCGUCGAgGCuAUCgAUGGAgGGCaGGAc -3' miRNA: 3'- -GCAGCUgCGcUAG-UACCUgCCGcUCU- -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 49026 | 0.68 | 0.64403 |
Target: 5'- gCGUCGACGUGAUgG-GGAUGccCGAGGa -3' miRNA: 3'- -GCAGCUGCGCUAgUaCCUGCc-GCUCU- -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 45683 | 0.68 | 0.637551 |
Target: 5'- gCGUCGACGaGAUCGUGcGCGGagacaagcaacuccuCGAGGg -3' miRNA: 3'- -GCAGCUGCgCUAGUACcUGCC---------------GCUCU- -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 5504 | 0.68 | 0.632151 |
Target: 5'- aGUCGACGa-GUCguuccuaGUGGGUGGCGAGGa -3' miRNA: 3'- gCAGCUGCgcUAG-------UACCUGCCGCUCU- -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 1120 | 0.68 | 0.62243 |
Target: 5'- uCGUCGAgGaGGUCcUGGAUGGCGcGGu -3' miRNA: 3'- -GCAGCUgCgCUAGuACCUGCCGCuCU- -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 53229 | 0.69 | 0.608403 |
Target: 5'- cCGUCGugucaucuacgagcGgGCGGUCGUcGACGGCGAcGAg -3' miRNA: 3'- -GCAGC--------------UgCGCUAGUAcCUGCCGCU-CU- -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 2172 | 0.69 | 0.600862 |
Target: 5'- aCGUCGAUGCagucgcucGAgcgCcgGGACGGCaAGAu -3' miRNA: 3'- -GCAGCUGCG--------CUa--GuaCCUGCCGcUCU- -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 39046 | 0.69 | 0.590113 |
Target: 5'- gGUCGAUGCGAUCG-GGACGuuguCGAu- -3' miRNA: 3'- gCAGCUGCGCUAGUaCCUGCc---GCUcu -5' |
|||||||
16468 | 5' | -55.3 | NC_004084.1 | + | 14093 | 0.69 | 0.568724 |
Target: 5'- aCGUCGAUGUcGUCGUGG-CGGCa--- -3' miRNA: 3'- -GCAGCUGCGcUAGUACCuGCCGcucu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home