Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1647 | 3' | -59.9 | NC_001347.2 | + | 222866 | 0.66 | 0.880596 |
Target: 5'- uGGCgcugugCGUCGUCucuucguCCCGUcucccucUGUGGUCg -3' miRNA: 3'- gCCGa-----GCAGCAGu------GGGCGc------ACACCGG- -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 110215 | 0.66 | 0.880596 |
Target: 5'- gCGGCUCGcuggaagccggUCGUCugcgacuccuggACCUGCGUaccaacauagagGUGaGCCg -3' miRNA: 3'- -GCCGAGC-----------AGCAG------------UGGGCGCA------------CAC-CGG- -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 169118 | 0.66 | 0.873903 |
Target: 5'- aCGGcCUCGgccgCG-CGCgCCGCGcugcaGUGGCUg -3' miRNA: 3'- -GCC-GAGCa---GCaGUG-GGCGCa----CACCGG- -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 217151 | 0.66 | 0.86702 |
Target: 5'- -cGCUCGUCaUCuggaCCGUaGUGUGGCUc -3' miRNA: 3'- gcCGAGCAGcAGug--GGCG-CACACCGG- -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 1922 | 0.66 | 0.86702 |
Target: 5'- gGGCgCGgUGcUGCCCGCGcgGUGGCUg -3' miRNA: 3'- gCCGaGCaGCaGUGGGCGCa-CACCGG- -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 161273 | 0.66 | 0.859953 |
Target: 5'- uGGacgUGUCGUUccagcgcguucaACCCGCGUGUaaaGGCg -3' miRNA: 3'- gCCga-GCAGCAG------------UGGGCGCACA---CCGg -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 81472 | 0.66 | 0.845285 |
Target: 5'- aCGGUgaaaguggCGUCGUCGCUCGgCGgGUGcGCa -3' miRNA: 3'- -GCCGa-------GCAGCAGUGGGC-GCaCAC-CGg -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 156507 | 0.67 | 0.837695 |
Target: 5'- gCGGUcCGUCccuguggcgCGCCCGCaUGUcGGCCg -3' miRNA: 3'- -GCCGaGCAGca-------GUGGGCGcACA-CCGG- -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 63091 | 0.67 | 0.829941 |
Target: 5'- gGGCUCGgcaagugccgcCGUgGCcgCCGCGgccgccgcUGUGGCCg -3' miRNA: 3'- gCCGAGCa----------GCAgUG--GGCGC--------ACACCGG- -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 110089 | 0.67 | 0.829941 |
Target: 5'- aGGCaUCGUCcUCGCCCG-GUGagGGaCCc -3' miRNA: 3'- gCCG-AGCAGcAGUGGGCgCACa-CC-GG- -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 24399 | 0.67 | 0.829941 |
Target: 5'- cCGGCUUGcUCcUCuuccaaaucUCCGCGgcgGUGGCCg -3' miRNA: 3'- -GCCGAGC-AGcAGu--------GGGCGCa--CACCGG- -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 80521 | 0.67 | 0.822031 |
Target: 5'- gGGCgcgcaGUCaaUCACCCcaGCGUGcGGCCu -3' miRNA: 3'- gCCGag---CAGc-AGUGGG--CGCACaCCGG- -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 39625 | 0.67 | 0.797421 |
Target: 5'- gCGGa-CGccuUCGUCGCCCGUGUGccgcgGGCg -3' miRNA: 3'- -GCCgaGC---AGCAGUGGGCGCACa----CCGg -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 67379 | 0.68 | 0.788093 |
Target: 5'- uCGGaCUCcugcaccGUC-UCGCCCGCGcUGUGGgCg -3' miRNA: 3'- -GCC-GAG-------CAGcAGUGGGCGC-ACACCgG- -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 81173 | 0.68 | 0.780351 |
Target: 5'- -aGC-CGUCGUagacauaaaACUCGCG-GUGGCCg -3' miRNA: 3'- gcCGaGCAGCAg--------UGGGCGCaCACCGG- -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 184949 | 0.68 | 0.771638 |
Target: 5'- -aGCUCGUCG--GCCgGCGUG-GGCg -3' miRNA: 3'- gcCGAGCAGCagUGGgCGCACaCCGg -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 63251 | 0.68 | 0.753894 |
Target: 5'- gCGGC-CGcUG-CGCCCGCc-GUGGCCa -3' miRNA: 3'- -GCCGaGCaGCaGUGGGCGcaCACCGG- -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 140300 | 0.68 | 0.753894 |
Target: 5'- gGGUUCGUCGacgcucacgaaUCACCUG-GUG-GGCUg -3' miRNA: 3'- gCCGAGCAGC-----------AGUGGGCgCACaCCGG- -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 18551 | 0.69 | 0.735775 |
Target: 5'- uGGUaCGUCGUCGgCCuCGUG-GGCUa -3' miRNA: 3'- gCCGaGCAGCAGUgGGcGCACaCCGG- -5' |
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1647 | 3' | -59.9 | NC_001347.2 | + | 77297 | 0.69 | 0.708025 |
Target: 5'- aGGCgUCGUCG-UACUUggGCGUG-GGCCg -3' miRNA: 3'- gCCG-AGCAGCaGUGGG--CGCACaCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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