miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1647 3' -59.9 NC_001347.2 + 1922 0.66 0.86702
Target:  5'- gGGCgCGgUGcUGCCCGCGcgGUGGCUg -3'
miRNA:   3'- gCCGaGCaGCaGUGGGCGCa-CACCGG- -5'
1647 3' -59.9 NC_001347.2 + 18551 0.69 0.735775
Target:  5'- uGGUaCGUCGUCGgCCuCGUG-GGCUa -3'
miRNA:   3'- gCCGaGCAGCAGUgGGcGCACaCCGG- -5'
1647 3' -59.9 NC_001347.2 + 24399 0.67 0.829941
Target:  5'- cCGGCUUGcUCcUCuuccaaaucUCCGCGgcgGUGGCCg -3'
miRNA:   3'- -GCCGAGC-AGcAGu--------GGGCGCa--CACCGG- -5'
1647 3' -59.9 NC_001347.2 + 39096 0.74 0.41477
Target:  5'- uGGCUgCGcggCGUCACCCGCGcGUagaauccguacGGCCg -3'
miRNA:   3'- gCCGA-GCa--GCAGUGGGCGCaCA-----------CCGG- -5'
1647 3' -59.9 NC_001347.2 + 39625 0.67 0.797421
Target:  5'- gCGGa-CGccuUCGUCGCCCGUGUGccgcgGGCg -3'
miRNA:   3'- -GCCgaGC---AGCAGUGGGCGCACa----CCGg -5'
1647 3' -59.9 NC_001347.2 + 63091 0.67 0.829941
Target:  5'- gGGCUCGgcaagugccgcCGUgGCcgCCGCGgccgccgcUGUGGCCg -3'
miRNA:   3'- gCCGAGCa----------GCAgUG--GGCGC--------ACACCGG- -5'
1647 3' -59.9 NC_001347.2 + 63251 0.68 0.753894
Target:  5'- gCGGC-CGcUG-CGCCCGCc-GUGGCCa -3'
miRNA:   3'- -GCCGaGCaGCaGUGGGCGcaCACCGG- -5'
1647 3' -59.9 NC_001347.2 + 67379 0.68 0.788093
Target:  5'- uCGGaCUCcugcaccGUC-UCGCCCGCGcUGUGGgCg -3'
miRNA:   3'- -GCC-GAG-------CAGcAGUGGGCGC-ACACCgG- -5'
1647 3' -59.9 NC_001347.2 + 75970 0.7 0.641648
Target:  5'- gGGCUgCGgcgaGUCGCCCaGCGgGUcGGCCa -3'
miRNA:   3'- gCCGA-GCag--CAGUGGG-CGCaCA-CCGG- -5'
1647 3' -59.9 NC_001347.2 + 77297 0.69 0.708025
Target:  5'- aGGCgUCGUCG-UACUUggGCGUG-GGCCg -3'
miRNA:   3'- gCCG-AGCAGCaGUGGG--CGCACaCCGG- -5'
1647 3' -59.9 NC_001347.2 + 80521 0.67 0.822031
Target:  5'- gGGCgcgcaGUCaaUCACCCcaGCGUGcGGCCu -3'
miRNA:   3'- gCCGag---CAGc-AGUGGG--CGCACaCCGG- -5'
1647 3' -59.9 NC_001347.2 + 81173 0.68 0.780351
Target:  5'- -aGC-CGUCGUagacauaaaACUCGCG-GUGGCCg -3'
miRNA:   3'- gcCGaGCAGCAg--------UGGGCGCaCACCGG- -5'
1647 3' -59.9 NC_001347.2 + 81472 0.66 0.845285
Target:  5'- aCGGUgaaaguggCGUCGUCGCUCGgCGgGUGcGCa -3'
miRNA:   3'- -GCCGa-------GCAGCAGUGGGC-GCaCAC-CGg -5'
1647 3' -59.9 NC_001347.2 + 85344 0.7 0.670272
Target:  5'- -cGCcagCGcCGUCGCCCGCGgcuaGGCCg -3'
miRNA:   3'- gcCGa--GCaGCAGUGGGCGCaca-CCGG- -5'
1647 3' -59.9 NC_001347.2 + 89738 0.69 0.698652
Target:  5'- -cGC-CGUCGUCGCCUGCGgcGUcGGCg -3'
miRNA:   3'- gcCGaGCAGCAGUGGGCGCa-CA-CCGg -5'
1647 3' -59.9 NC_001347.2 + 110089 0.67 0.829941
Target:  5'- aGGCaUCGUCcUCGCCCG-GUGagGGaCCc -3'
miRNA:   3'- gCCG-AGCAGcAGUGGGCgCACa-CC-GG- -5'
1647 3' -59.9 NC_001347.2 + 110215 0.66 0.880596
Target:  5'- gCGGCUCGcuggaagccggUCGUCugcgacuccuggACCUGCGUaccaacauagagGUGaGCCg -3'
miRNA:   3'- -GCCGAGC-----------AGCAG------------UGGGCGCA------------CAC-CGG- -5'
1647 3' -59.9 NC_001347.2 + 128324 1.12 0.001624
Target:  5'- gCGGCUCGUCGUCACCCGCGUGUGGCCg -3'
miRNA:   3'- -GCCGAGCAGCAGUGGGCGCACACCGG- -5'
1647 3' -59.9 NC_001347.2 + 140300 0.68 0.753894
Target:  5'- gGGUUCGUCGacgcucacgaaUCACCUG-GUG-GGCUg -3'
miRNA:   3'- gCCGAGCAGC-----------AGUGGGCgCACaCCGG- -5'
1647 3' -59.9 NC_001347.2 + 156507 0.67 0.837695
Target:  5'- gCGGUcCGUCccuguggcgCGCCCGCaUGUcGGCCg -3'
miRNA:   3'- -GCCGaGCAGca-------GUGGGCGcACA-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.