miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1647 5' -52.7 NC_001347.2 + 183680 0.66 0.992679
Target:  5'- gUCGAGCugCgugcgcaggUCcCGCAACACgucGCGGc -3'
miRNA:   3'- -AGCUCGugG---------AGuGCGUUGUGa--UGCUu -5'
1647 5' -52.7 NC_001347.2 + 127115 0.66 0.991615
Target:  5'- cCGAGC-CCgcgCugGCAcCGCUGCuGGAg -3'
miRNA:   3'- aGCUCGuGGa--GugCGUuGUGAUG-CUU- -5'
1647 5' -52.7 NC_001347.2 + 80452 0.66 0.991615
Target:  5'- aUCGGcCGCCaacgccguaUCGCGUGACugUACGAu -3'
miRNA:   3'- -AGCUcGUGG---------AGUGCGUUGugAUGCUu -5'
1647 5' -52.7 NC_001347.2 + 194436 0.66 0.990433
Target:  5'- gCGAGCGgggUUCACcuGCAGCGCUACGu- -3'
miRNA:   3'- aGCUCGUg--GAGUG--CGUUGUGAUGCuu -5'
1647 5' -52.7 NC_001347.2 + 226230 0.66 0.990433
Target:  5'- cUCGAcGCGCCUguCGCGAUcCUcaugGCGAGg -3'
miRNA:   3'- -AGCU-CGUGGAguGCGUUGuGA----UGCUU- -5'
1647 5' -52.7 NC_001347.2 + 177757 0.66 0.989123
Target:  5'- cCGAGgGCCUCucaggacuuGCGCGAgAagcCUGCGAAg -3'
miRNA:   3'- aGCUCgUGGAG---------UGCGUUgU---GAUGCUU- -5'
1647 5' -52.7 NC_001347.2 + 25870 0.66 0.989123
Target:  5'- aCGaAGCgGCC-CugGCuguACGCUACGAGa -3'
miRNA:   3'- aGC-UCG-UGGaGugCGu--UGUGAUGCUU- -5'
1647 5' -52.7 NC_001347.2 + 93195 0.66 0.987678
Target:  5'- uUUGGGCGCCgaGCGCucGCGCUgGCGAc -3'
miRNA:   3'- -AGCUCGUGGagUGCGu-UGUGA-UGCUu -5'
1647 5' -52.7 NC_001347.2 + 101345 0.66 0.987678
Target:  5'- uUCGAGCucagcgcagccuGCCUCACGUAu--CUGCGc- -3'
miRNA:   3'- -AGCUCG------------UGGAGUGCGUuguGAUGCuu -5'
1647 5' -52.7 NC_001347.2 + 172682 0.66 0.986089
Target:  5'- -aGAcGCGCCUCucggagccgccgACGCuGGCGCUGCGGc -3'
miRNA:   3'- agCU-CGUGGAG------------UGCG-UUGUGAUGCUu -5'
1647 5' -52.7 NC_001347.2 + 140881 0.66 0.986089
Target:  5'- uUCGGagguGCGCCUCAagaGCAGcCGCgACGAGg -3'
miRNA:   3'- -AGCU----CGUGGAGUg--CGUU-GUGaUGCUU- -5'
1647 5' -52.7 NC_001347.2 + 126668 0.66 0.986089
Target:  5'- cUCGAGUACCggCGCGUgguggcuuacGACGCUgacGCGGc -3'
miRNA:   3'- -AGCUCGUGGa-GUGCG----------UUGUGA---UGCUu -5'
1647 5' -52.7 NC_001347.2 + 143624 0.66 0.986089
Target:  5'- aUCGAGCGCUUCcugUGCAAaaugaACUACGu- -3'
miRNA:   3'- -AGCUCGUGGAGu--GCGUUg----UGAUGCuu -5'
1647 5' -52.7 NC_001347.2 + 96937 0.67 0.984347
Target:  5'- gCGuccGCGCCUgCACGCcgccGugACUGCGAu -3'
miRNA:   3'- aGCu--CGUGGA-GUGCG----UugUGAUGCUu -5'
1647 5' -52.7 NC_001347.2 + 140328 0.67 0.982445
Target:  5'- gUGGGCugCgcCGCGgGGCugUGCGAGg -3'
miRNA:   3'- aGCUCGugGa-GUGCgUUGugAUGCUU- -5'
1647 5' -52.7 NC_001347.2 + 195516 0.67 0.982445
Target:  5'- aCGAGCGCCUauuuCGCGAuccgcucacCACgUACGAGu -3'
miRNA:   3'- aGCUCGUGGAgu--GCGUU---------GUG-AUGCUU- -5'
1647 5' -52.7 NC_001347.2 + 99293 0.67 0.978124
Target:  5'- aCGAcgGCACggCGCGUAACGCUGCa-- -3'
miRNA:   3'- aGCU--CGUGgaGUGCGUUGUGAUGcuu -5'
1647 5' -52.7 NC_001347.2 + 196995 0.67 0.975691
Target:  5'- gUCcAGCGCCugcUCugGCAcuCGCUGCGAc -3'
miRNA:   3'- -AGcUCGUGG---AGugCGUu-GUGAUGCUu -5'
1647 5' -52.7 NC_001347.2 + 76608 0.67 0.975691
Target:  5'- -aGAGguCCUCGCagGCGGCgGCUGCGGc -3'
miRNA:   3'- agCUCguGGAGUG--CGUUG-UGAUGCUu -5'
1647 5' -52.7 NC_001347.2 + 65238 0.67 0.975691
Target:  5'- cCGcGGCuacgACCUCACGCGACugUcauACGGg -3'
miRNA:   3'- aGC-UCG----UGGAGUGCGUUGugA---UGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.