miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1647 5' -52.7 NC_001347.2 + 128358 1.06 0.011925
Target:  5'- cUCGAGCACCUCACGCAACACUACGAAc -3'
miRNA:   3'- -AGCUCGUGGAGUGCGUUGUGAUGCUU- -5'
1647 5' -52.7 NC_001347.2 + 1638 0.78 0.53961
Target:  5'- gUGGGCACCccgCGCGCGACGCUGCu-- -3'
miRNA:   3'- aGCUCGUGGa--GUGCGUUGUGAUGcuu -5'
1647 5' -52.7 NC_001347.2 + 14138 0.76 0.631315
Target:  5'- -gGAGCACUUUcCGCGGCGCUugGGAg -3'
miRNA:   3'- agCUCGUGGAGuGCGUUGUGAugCUU- -5'
1647 5' -52.7 NC_001347.2 + 130027 0.74 0.74268
Target:  5'- aUGAGCGCCUggcUACGCGACGacguCUGCGAu -3'
miRNA:   3'- aGCUCGUGGA---GUGCGUUGU----GAUGCUu -5'
1647 5' -52.7 NC_001347.2 + 25415 0.74 0.762019
Target:  5'- gUUGAGCGCCUUcugcuACGCGGCGCccGCGAc -3'
miRNA:   3'- -AGCUCGUGGAG-----UGCGUUGUGa-UGCUu -5'
1647 5' -52.7 NC_001347.2 + 193975 0.74 0.762019
Target:  5'- aCGGGCACCgugUACGCGGCGCUGg--- -3'
miRNA:   3'- aGCUCGUGGa--GUGCGUUGUGAUgcuu -5'
1647 5' -52.7 NC_001347.2 + 91133 0.73 0.816948
Target:  5'- aCGAGCGCCUCAagaGCG-CGCU-CGAu -3'
miRNA:   3'- aGCUCGUGGAGUg--CGUuGUGAuGCUu -5'
1647 5' -52.7 NC_001347.2 + 17773 0.73 0.825558
Target:  5'- -gGGGCACCUaucuccgacaGCGCGacgaGCGCUGCGAAg -3'
miRNA:   3'- agCUCGUGGAg---------UGCGU----UGUGAUGCUU- -5'
1647 5' -52.7 NC_001347.2 + 214686 0.71 0.873227
Target:  5'- aCGAGCACCaUCACggcggcgaacaGCAGCAUcGCGAc -3'
miRNA:   3'- aGCUCGUGG-AGUG-----------CGUUGUGaUGCUu -5'
1647 5' -52.7 NC_001347.2 + 166333 0.7 0.913092
Target:  5'- cUCGAGCGCCaaugUCACGCGuguuuccaACACUuuGAu -3'
miRNA:   3'- -AGCUCGUGG----AGUGCGU--------UGUGAugCUu -5'
1647 5' -52.7 NC_001347.2 + 52646 0.7 0.929829
Target:  5'- cUCGuGgACCUCACGUugaacuacCACUACGAu -3'
miRNA:   3'- -AGCuCgUGGAGUGCGuu------GUGAUGCUu -5'
1647 5' -52.7 NC_001347.2 + 89550 0.69 0.944394
Target:  5'- gCGGGCACCUCGCGCccCGagaaGCGGc -3'
miRNA:   3'- aGCUCGUGGAGUGCGuuGUga--UGCUu -5'
1647 5' -52.7 NC_001347.2 + 166534 0.69 0.948771
Target:  5'- aUCGcGGCGaaccagCUCGCGCAACuguuCUACGAAa -3'
miRNA:   3'- -AGC-UCGUg-----GAGUGCGUUGu---GAUGCUU- -5'
1647 5' -52.7 NC_001347.2 + 199705 0.69 0.948771
Target:  5'- gCGAGCcCCgaggCGCGCc-CGCUGCGAu -3'
miRNA:   3'- aGCUCGuGGa---GUGCGuuGUGAUGCUu -5'
1647 5' -52.7 NC_001347.2 + 39138 0.69 0.948771
Target:  5'- cCGAGCggcagcagcguGCC-CGCGUcGCGCUGCGAc -3'
miRNA:   3'- aGCUCG-----------UGGaGUGCGuUGUGAUGCUu -5'
1647 5' -52.7 NC_001347.2 + 66137 0.69 0.948771
Target:  5'- -gGGGCGCCgaCGCGC-ACAcCUGCGAGu -3'
miRNA:   3'- agCUCGUGGa-GUGCGuUGU-GAUGCUU- -5'
1647 5' -52.7 NC_001347.2 + 182883 0.69 0.952913
Target:  5'- aUCGAGCuggGCCUCGCGCGGCuCgcCGu- -3'
miRNA:   3'- -AGCUCG---UGGAGUGCGUUGuGauGCuu -5'
1647 5' -52.7 NC_001347.2 + 69480 0.69 0.952913
Target:  5'- gUCGcGUAauCCUCugGaCGACACUGCGGc -3'
miRNA:   3'- -AGCuCGU--GGAGugC-GUUGUGAUGCUu -5'
1647 5' -52.7 NC_001347.2 + 38710 0.69 0.955288
Target:  5'- cCGAGCGCCgucgccuccucggCGCGCAGCAacguCUGuCGGAg -3'
miRNA:   3'- aGCUCGUGGa------------GUGCGUUGU----GAU-GCUU- -5'
1647 5' -52.7 NC_001347.2 + 95468 0.68 0.963968
Target:  5'- aUGGGCGCgCgUCACGCGGCGCcggugucgGCGGAu -3'
miRNA:   3'- aGCUCGUG-G-AGUGCGUUGUGa-------UGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.