miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1647 5' -52.7 NC_001347.2 + 988 0.68 0.967211
Target:  5'- -gGAGCGCCgUCACaGCGgGCACUgguGCGAGu -3'
miRNA:   3'- agCUCGUGG-AGUG-CGU-UGUGA---UGCUU- -5'
1647 5' -52.7 NC_001347.2 + 1638 0.78 0.53961
Target:  5'- gUGGGCACCccgCGCGCGACGCUGCu-- -3'
miRNA:   3'- aGCUCGUGGa--GUGCGUUGUGAUGcuu -5'
1647 5' -52.7 NC_001347.2 + 14138 0.76 0.631315
Target:  5'- -gGAGCACUUUcCGCGGCGCUugGGAg -3'
miRNA:   3'- agCUCGUGGAGuGCGUUGUGAugCUU- -5'
1647 5' -52.7 NC_001347.2 + 17773 0.73 0.825558
Target:  5'- -gGGGCACCUaucuccgacaGCGCGacgaGCGCUGCGAAg -3'
miRNA:   3'- agCUCGUGGAg---------UGCGU----UGUGAUGCUU- -5'
1647 5' -52.7 NC_001347.2 + 25415 0.74 0.762019
Target:  5'- gUUGAGCGCCUUcugcuACGCGGCGCccGCGAc -3'
miRNA:   3'- -AGCUCGUGGAG-----UGCGUUGUGa-UGCUu -5'
1647 5' -52.7 NC_001347.2 + 25870 0.66 0.989123
Target:  5'- aCGaAGCgGCC-CugGCuguACGCUACGAGa -3'
miRNA:   3'- aGC-UCG-UGGaGugCGu--UGUGAUGCUU- -5'
1647 5' -52.7 NC_001347.2 + 38710 0.69 0.955288
Target:  5'- cCGAGCGCCgucgccuccucggCGCGCAGCAacguCUGuCGGAg -3'
miRNA:   3'- aGCUCGUGGa------------GUGCGUUGU----GAU-GCUU- -5'
1647 5' -52.7 NC_001347.2 + 39138 0.69 0.948771
Target:  5'- cCGAGCggcagcagcguGCC-CGCGUcGCGCUGCGAc -3'
miRNA:   3'- aGCUCG-----------UGGaGUGCGuUGUGAUGCUu -5'
1647 5' -52.7 NC_001347.2 + 52646 0.7 0.929829
Target:  5'- cUCGuGgACCUCACGUugaacuacCACUACGAu -3'
miRNA:   3'- -AGCuCgUGGAGUGCGuu------GUGAUGCUu -5'
1647 5' -52.7 NC_001347.2 + 65238 0.67 0.975691
Target:  5'- cCGcGGCuacgACCUCACGCGACugUcauACGGg -3'
miRNA:   3'- aGC-UCG----UGGAGUGCGUUGugA---UGCUu -5'
1647 5' -52.7 NC_001347.2 + 66137 0.69 0.948771
Target:  5'- -gGGGCGCCgaCGCGC-ACAcCUGCGAGu -3'
miRNA:   3'- agCUCGUGGa-GUGCGuUGU-GAUGCUU- -5'
1647 5' -52.7 NC_001347.2 + 69480 0.69 0.952913
Target:  5'- gUCGcGUAauCCUCugGaCGACACUGCGGc -3'
miRNA:   3'- -AGCuCGU--GGAGugC-GUUGUGAUGCUu -5'
1647 5' -52.7 NC_001347.2 + 76608 0.67 0.975691
Target:  5'- -aGAGguCCUCGCagGCGGCgGCUGCGGc -3'
miRNA:   3'- agCUCguGGAGUG--CGUUG-UGAUGCUu -5'
1647 5' -52.7 NC_001347.2 + 80452 0.66 0.991615
Target:  5'- aUCGGcCGCCaacgccguaUCGCGUGACugUACGAu -3'
miRNA:   3'- -AGCUcGUGG---------AGUGCGUUGugAUGCUu -5'
1647 5' -52.7 NC_001347.2 + 89550 0.69 0.944394
Target:  5'- gCGGGCACCUCGCGCccCGagaaGCGGc -3'
miRNA:   3'- aGCUCGUGGAGUGCGuuGUga--UGCUu -5'
1647 5' -52.7 NC_001347.2 + 91133 0.73 0.816948
Target:  5'- aCGAGCGCCUCAagaGCG-CGCU-CGAu -3'
miRNA:   3'- aGCUCGUGGAGUg--CGUuGUGAuGCUu -5'
1647 5' -52.7 NC_001347.2 + 93195 0.66 0.987678
Target:  5'- uUUGGGCGCCgaGCGCucGCGCUgGCGAc -3'
miRNA:   3'- -AGCUCGUGGagUGCGu-UGUGA-UGCUu -5'
1647 5' -52.7 NC_001347.2 + 95468 0.68 0.963968
Target:  5'- aUGGGCGCgCgUCACGCGGCGCcggugucgGCGGAu -3'
miRNA:   3'- aGCUCGUG-G-AGUGCGUUGUGa-------UGCUU- -5'
1647 5' -52.7 NC_001347.2 + 96937 0.67 0.984347
Target:  5'- gCGuccGCGCCUgCACGCcgccGugACUGCGAu -3'
miRNA:   3'- aGCu--CGUGGA-GUGCG----UugUGAUGCUu -5'
1647 5' -52.7 NC_001347.2 + 99293 0.67 0.978124
Target:  5'- aCGAcgGCACggCGCGUAACGCUGCa-- -3'
miRNA:   3'- aGCU--CGUGgaGUGCGUUGUGAUGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.