miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16470 3' -59.5 NC_004084.1 + 47113 1.12 0.000267
Target:  5'- gUCGGCACCUGCAUCCGGUGCGACGCCg -3'
miRNA:   3'- -AGCCGUGGACGUAGGCCACGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 34951 0.72 0.231243
Target:  5'- uUCGuGCGCUaGCggCUGGUcGCGACGCUg -3'
miRNA:   3'- -AGC-CGUGGaCGuaGGCCA-CGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 54658 0.71 0.254934
Target:  5'- aCGGCACCUGUGucagcggguuUCCGGUcGCGAuugacuggcaaacCGCUc -3'
miRNA:   3'- aGCCGUGGACGU----------AGGCCA-CGCU-------------GCGG- -5'
16470 3' -59.5 NC_004084.1 + 29989 0.7 0.288874
Target:  5'- cCGGCgucgACCUgGUcgCUGGUGaCGACGUCa -3'
miRNA:   3'- aGCCG----UGGA-CGuaGGCCAC-GCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 29416 0.7 0.288874
Target:  5'- -gGGCuCCUGCAUCgCGGUcaucagGCcGACGUCg -3'
miRNA:   3'- agCCGuGGACGUAG-GCCA------CG-CUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 17659 0.7 0.295931
Target:  5'- uUCGGCuucgaCUGCcgaGUCCGGUGCu-UGCCc -3'
miRNA:   3'- -AGCCGug---GACG---UAGGCCACGcuGCGG- -5'
16470 3' -59.5 NC_004084.1 + 21384 0.7 0.303122
Target:  5'- gUCGGUGCCagcucggGCAugaUCCGGU-CGACGUCc -3'
miRNA:   3'- -AGCCGUGGa------CGU---AGGCCAcGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 17236 0.7 0.309707
Target:  5'- cUCGGUgaagcagcaggAUCUGCggCCGGUgcagucgGCGAUGCCc -3'
miRNA:   3'- -AGCCG-----------UGGACGuaGGCCA-------CGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 11510 0.69 0.33635
Target:  5'- -aGGCAucugcaucaacaccuCCUGCAgccgCCGGgGCGugGCg -3'
miRNA:   3'- agCCGU---------------GGACGUa---GGCCaCGCugCGg -5'
16470 3' -59.5 NC_004084.1 + 29622 0.68 0.391008
Target:  5'- aCGGCACCUgGCugucggcUCCGGacGuCGACGaCCg -3'
miRNA:   3'- aGCCGUGGA-CGu------AGGCCa-C-GCUGC-GG- -5'
16470 3' -59.5 NC_004084.1 + 43839 0.68 0.426837
Target:  5'- -gGGCGCgaGaCAUCC---GCGACGCCg -3'
miRNA:   3'- agCCGUGgaC-GUAGGccaCGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 22458 0.67 0.436095
Target:  5'- gUCGGgACUggucacgGCcgCCGaccccgGCGACGCCg -3'
miRNA:   3'- -AGCCgUGGa------CGuaGGCca----CGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 32054 0.67 0.436095
Target:  5'- aCGGCGa-UGgAUUCGGuUGCGGCGUCc -3'
miRNA:   3'- aGCCGUggACgUAGGCC-ACGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 36190 0.67 0.445467
Target:  5'- cUCGGCGagaUGCGUUCGGUacucgagcgucGUGACGUUg -3'
miRNA:   3'- -AGCCGUgg-ACGUAGGCCA-----------CGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 51463 0.67 0.445467
Target:  5'- gCGGCGgCUGUA--CGG-GCGACGaCCg -3'
miRNA:   3'- aGCCGUgGACGUagGCCaCGCUGC-GG- -5'
16470 3' -59.5 NC_004084.1 + 16937 0.67 0.454951
Target:  5'- uUCGGCAUCgGCGggCGucGCGACGUCg -3'
miRNA:   3'- -AGCCGUGGaCGUagGCcaCGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 48910 0.67 0.464543
Target:  5'- gUCGGUcgGCCacgacuUCCGGU-CGGCGCCg -3'
miRNA:   3'- -AGCCG--UGGacgu--AGGCCAcGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 54565 0.66 0.493928
Target:  5'- gUUGGaCACCgaGguUCCGGUGgagccgucguCGGCGUCg -3'
miRNA:   3'- -AGCC-GUGGa-CguAGGCCAC----------GCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 49513 0.66 0.493928
Target:  5'- uUCGGCuuccGCCUcuuCGUCCGaGU-CGACGCUg -3'
miRNA:   3'- -AGCCG----UGGAc--GUAGGC-CAcGCUGCGG- -5'
16470 3' -59.5 NC_004084.1 + 18572 0.66 0.493928
Target:  5'- aCGGCGCCgcgGCcgCCGaUGgacuCGAgCGCCa -3'
miRNA:   3'- aGCCGUGGa--CGuaGGCcAC----GCU-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.